RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 ADAT1Q9BUB4 502 aaKnown RBP14.13□□□□□ -0.15
CLK3-210ENST00000563112 SSBP3Q9BWW4 388 aaPredicted RBP14.13□□□□□ -0.15
CLK3-210ENST00000563112 OR51V1Q9H2C8 321 aa14.13□□□□□ -0.15
CLK3-210ENST00000563112 FN3KRPQ9HA64 309 aa14.13□□□□□ -0.15
CLK3-210ENST00000563112 UFSP2Q9NUQ7 469 aa14.13□□□□□ -0.15
CLK3-210ENST00000563112 MRPL15Q9P015 296 aaKnown RBP14.13□□□□□ -0.15
CLK3-210ENST00000563112 DNAJB9Q9UBS3 223 aa14.13□□□□□ -0.15
CLK3-210ENST00000563112 OPN4Q9UHM6 478 aa14.13□□□□□ -0.15
CLK3-210ENST00000563112 INSIG2Q9Y5U4 225 aa14.13□□□□□ -0.15
CLK3-210ENST00000563112 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.12□□□□□ -0.15
CLK3-210ENST00000563112 TRAPPC2LH3BP13 241 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 TRIM77I1YAP6 450 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 DNAJC8O75937 253 aaPredicted RBP14.12□□□□□ -0.15
CLK3-210ENST00000563112 ANXA2P07355 339 aaKnown RBP14.12□□□□□ -0.15
CLK3-210ENST00000563112 OSMP13725 252 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 DDOSTP39656 456 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 PMELP40967 661 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 CX3CR1P49238 355 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 HILS1P60008 231 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 GNB2P62879 340 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 ZNF404Q494X3 552 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 ARMCX4Q5H9R4 360 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 PRAMEF6Q5VXH4 476 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 KLBQ86Z14 1044 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 DEFB108BQ8NET1 73 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 OR8B3Q8NGG8 313 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 OR8B2Q96RD0 313 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 TMEM246Q9BRR3 403 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 ABHD6Q9BV23 337 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 FAM53CQ9NYF3 392 aa14.12□□□□□ -0.15
CLK3-210ENST00000563112 DOCK11Q5JSL3 2073 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 ANKRD30BLA7E2S9 258 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 FAM20BO75063 409 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 FKBP6O75344 327 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 KCNJ8Q15842 424 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 TIGD6Q17RP2 521 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 BTNL3Q6UXE8 466 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 RHOUQ7L0Q8 258 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 HIST2H2ABQ8IUE6 130 aaPredicted RBP14.11□□□□□ -0.15
CLK3-210ENST00000563112 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.11□□□□□ -0.15
CLK3-210ENST00000563112 PLPP7Q8NBV4 271 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 SEMA6DQ8NFY4 1073 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 OR56B2PQ8NGI1 322 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 RNF133Q8WVZ7 376 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 SLC7A6OSQ96CW6 309 aaPredicted RBP14.11□□□□□ -0.15
CLK3-210ENST00000563112 MARCH7Q9H992 704 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 C14orf119Q9NWQ9 140 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 RNF7Q9UBF6 113 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 POMPQ9Y244 141 aa14.11□□□□□ -0.15
CLK3-210ENST00000563112 TCRBV3S1A0A5B6 114 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 HAX1O00165 279 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 FSHBP01225 129 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 H2BFMP0C1H6 154 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 PRKACGP22612 351 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 CFL1P23528 166 aaKnown RBP14.1□□□□□ -0.15
CLK3-210ENST00000563112 MPPED2Q15777 294 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 KLHL12Q53G59 568 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 FAM201AQ5SY85 155 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 PLBD1Q6P4A8 553 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 LRRN1Q6UXK5 716 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 RBMS3Q6XE24 437 aaKnown RBP14.1□□□□□ -0.15
CLK3-210ENST00000563112 DCDC5Q6ZRR9 648 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 ZNF454Q8N9F8 522 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 PAPD5Q8NDF8 572 aaKnown RBP14.1□□□□□ -0.15
CLK3-210ENST00000563112 OR52H1Q8NGJ2 320 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 SPSB4Q96A44 273 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 ZMYND19Q96E35 227 aaPredicted RBP14.1□□□□□ -0.15
CLK3-210ENST00000563112 SLC6A7Q99884 636 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 NTN4Q9HB63 628 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 KIF17Q9P2E2 1029 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 NUP50Q9UKX7 468 aa14.1□□□□□ -0.15
CLK3-210ENST00000563112 C5orf63A6NC05 138 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 PRODHO43272 600 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 PTBP3O95758 552 aaKnown RBP14.09□□□□□ -0.15
CLK3-210ENST00000563112 PITPNBP48739 271 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 RPS7P62081 194 aaKnown RBP14.09□□□□□ -0.15
CLK3-210ENST00000563112 ACTG1P63261 375 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 CDK5Q00535 292 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 C12orf54Q6X4T0 127 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 FAM57BQ71RH2 274 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 SLC16A9Q7RTY1 509 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 CPOQ8IVL8 374 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 TIGD4Q8IY51 512 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 HS3ST5Q8IZT8 346 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 BOLLQ8N9W6 283 aaKnown RBP14.09□□□□□ -0.15
CLK3-210ENST00000563112 OR8S1Q8NH09 359 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 THEM6Q8WUY1 208 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 RAB40AQ8WXH6 277 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 DNAJC9Q8WXX5 260 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 SGK3Q96BR1 496 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 NRBF2Q96F24 287 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 REEP6Q96HR9 211 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 PGAM5Q96HS1 289 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 OR10A2Q9H208 303 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 TRIM36Q9NQ86 728 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 DNAJC27Q9NZQ0 273 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 CLN8Q9UBY8 286 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 ANK2Q01484 3957 aa14.09□□□□□ -0.15
CLK3-210ENST00000563112 A6NLC8 198 aa14.08□□□□□ -0.16
CLK3-210ENST00000563112 LGALS8O00214 317 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms