RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 HPXP02790 462 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 HLA-DPB1P04440 258 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 KRT8P05787 483 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 HTR1AP08908 422 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 RAC2P15153 192 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 SELEP16581 610 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ZNF19P17023 458 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 GCH1P30793 250 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 EVX1P49640 407 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 PPOXP50336 477 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 GTF2A1P52655 376 aaPredicted RBP8.33□□□□□ -1.08
CLK3-208ENST00000562626 ART1P52961 327 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ATP5J2P56134 94 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ACTC1P68032 377 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ACTA1P68133 377 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ST3GAL4Q11206 333 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 GALEQ14376 348 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 TESK1Q15569 626 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 NKPD1Q17RQ9 610 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ODF4Q2M2E3 257 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 WDR38Q5JTN6 314 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ARL9Q6T311 187 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ZNF485Q8NCK3 441 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 OR56B2PQ8NGI1 322 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 REEP6Q96HR9 211 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 JAM3Q9BX67 310 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 GSX2Q9BZM3 304 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 FGF23Q9GZV9 251 aaPredicted RBP8.33□□□□□ -1.08
CLK3-208ENST00000562626 DYNLRB1Q9NP97 96 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 ERVK-18Q9QC07 812 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 NUFIP1Q9UHK0 495 aaKnown RBP8.33□□□□□ -1.08
CLK3-208ENST00000562626 DIMT1Q9UNQ2 313 aaKnown RBP8.33□□□□□ -1.08
CLK3-208ENST00000562626 CACNG2Q9Y698 323 aa8.33□□□□□ -1.08
CLK3-208ENST00000562626 SIRT4Q9Y6E7 314 aaPredicted RBP8.33□□□□□ -1.08
CLK3-208ENST00000562626 MALRD1Q5VYJ5 2156 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 IGHV3-64DA0A0J9YX35 117 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 SNTNA6NMZ2 147 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 CD300LBA8K4G0 201 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 C17orf100A8MU93 164 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 IQCF6A8MYZ5 107 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 LOC110117498-PIK3R3F6TDL0 507 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 H3BSA7 217 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 P2RY10O00398 339 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 DENRO43583 198 aaKnown RBP8.32□□□□□ -1.08
CLK3-208ENST00000562626 SPRY3O43610 288 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 TIMM8AO60220 97 aaPredicted RBP8.32□□□□□ -1.08
CLK3-208ENST00000562626 SULT1C4O75897 302 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 FADS2O95864 444 aaKnown RBP8.32□□□□□ -1.08
CLK3-208ENST00000562626 PIPP12273 146 aaPredicted RBP8.32□□□□□ -1.08
CLK3-208ENST00000562626 DCTDP32321 178 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 GSK3AP49840 483 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 MMP16P51512 607 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 TSTQ16762 297 aaKnown RBP8.32□□□□□ -1.08
CLK3-208ENST00000562626 TIGD6Q17RP2 521 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 KLHL22Q53GT1 634 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 DMRTC1Q5HYR2 192 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 Q5PR19 223 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 DNM1P46Q6ZS02 220 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 PGAP1Q75T13 922 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 MRPL21Q7Z2W9 205 aaKnown RBP8.32□□□□□ -1.08
CLK3-208ENST00000562626 ELMOD2Q8IZ81 293 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 RDH10Q8IZV5 341 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 ZNF525Q8N782 197 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 WFDC11Q8NEX6 87 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 OR10AD1Q8NGE0 317 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 OR5L1Q8NGL2 311 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 OR10AC1Q8NH08 325 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 OR51E1Q8TCB6 317 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 SNX33Q8WV41 574 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 SPRYD4Q8WW59 207 aaPredicted RBP8.32□□□□□ -1.08
CLK3-208ENST00000562626 YIPF5Q969M3 257 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 TMEM80Q96HE8 168 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 FOXC2Q99958 501 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 CXXC4Q9H2H0 198 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 CXorf56Q9H5V9 222 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 NIPAL2Q9H841 368 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 GPR84Q9NQS5 396 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 DCAF16Q9NXF7 216 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 FRRS1LQ9P0K9 344 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 OR52A1Q9UKL2 312 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 GTF2A1LQ9UNN4 478 aa8.32□□□□□ -1.08
CLK3-208ENST00000562626 DSCAML1Q8TD84 2053 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 ACANP16112 2415 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 A0A1B0GWJ7 208 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 A6NIN4 97 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 OR4C45A6NMZ5 311 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 PTGES3LE9PB15 166 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 C3orf80F5H4A9 247 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 XRCC2O43543 280 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 SSX4O60224 188 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 MT-ND2P03891 347 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 CDK1P06493 297 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 CRHBPP24387 322 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 COL8A2P25067 703 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 DCKP27707 260 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 HSPA13P48723 471 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 ZNF81P51508 661 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 SLC35A2P78381 396 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 CCL8P80075 99 aa8.31□□□□□ -1.08
CLK3-208ENST00000562626 HOXA4Q00056 320 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 92.3 ms