RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 WISP1O95388 367 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 GPANK1O95872 356 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ITGA5P08648 1049 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 SELEP16581 610 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ADRA2CP18825 462 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 CDK2P24941 298 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 STOMP27105 288 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 CDAP32320 146 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 RFX2P48378 723 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 PRKXP51817 358 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 CLN3Q13286 438 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 KLF9Q13886 244 aaPredicted RBP6.6□□□□□ -1.35
VPS39-204ENST00000561818 ZNF169Q14929 603 aaPredicted RBP6.6□□□□□ -1.35
VPS39-204ENST00000561818 CDK10Q15131 360 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 GFOD2Q3B7J2 385 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 C2orf76Q3KRA6 126 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 KRTCAP3Q53RY4 240 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 CLVS2Q5SYC1 327 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 FBXW9Q5XUX1 488 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 CD276Q5ZPR3 534 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 AWAT2Q6E213 333 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 FAM57BQ71RH2 274 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 SPATC1Q76KD6 591 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 BTN2A1Q7KYR7 527 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.6□□□□□ -1.35
VPS39-204ENST00000561818 CADM3Q8N126 398 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 GABRG1Q8N1C3 465 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ZSCAN4Q8NAM6 433 aaPredicted RBP6.6□□□□□ -1.35
VPS39-204ENST00000561818 OR51A4Q8NGJ6 313 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 OR10S1Q8NGN2 331 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 OR6K3Q8NGY3 331 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 OR14K1Q8NGZ2 314 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ABHD3Q8WU67 409 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 SPSB4Q96A44 273 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ALKBH3Q96Q83 286 aaPredicted RBP6.6□□□□□ -1.35
VPS39-204ENST00000561818 ABHD1Q96SE0 405 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 GPER1Q99527 375 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 PRRT1Q99946 306 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 NEURL2Q9BR09 285 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 C1QTNF5Q9BXJ0 243 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 TMEM59Q9BXS4 323 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 CACNG6Q9BXT2 260 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 OR2H1Q9GZK4 316 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ATG5Q9H1Y0 275 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 DKK4Q9UBT3 224 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 KCNN3Q9UGI6 736 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 ING1Q9UK53 422 aaPredicted RBP6.6□□□□□ -1.35
VPS39-204ENST00000561818 EDARQ9UNE0 448 aa6.6□□□□□ -1.35
VPS39-204ENST00000561818 KIAA1549Q9HCM3 1950 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 IGHV3-15A0A0B4J1V0 119 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ZNF816-ZNF321PA0A0X1KG74 233 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 A0A1B0GTI1 187 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 A0A1B0GUH1 482 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 UBE2QL1A1L167 161 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 C7orf66A4D0T2 115 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 SMIM30A4D0T7 59 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A10PA6NDY2 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A18PA6NE21 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A16PA6NEW6 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A20PA6NIJ5 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A8PA6NJQ4 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A7PA6NKC0 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A22PA8MWA6 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 SNRPGP15A8MWD9 76 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A12PA8MX19 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A5PA8MXJ8 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A23PA8MXZ1 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 DISC1C4P0D8 188 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 F5H5K5 113 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 LDLRAD4O15165 306 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 PLA2G10O15496 165 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 RRP8O43159 456 aaKnown RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 AKR7A2O43488 359 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ICMTO60725 284 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 RAMP1O60894 148 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 WDR1O75083 606 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 TGM6O95932 706 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 OPN1LWP04000 364 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 TCRBP04435 133 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 IL5P05113 134 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A15PP0C7V4 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A13PP0C7W8 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A14PP0C7W9 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FAM90A24PP0C7X0 464 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 PSMB1P20618 241 aaKnown RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 MPZP25189 248 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 APLNRP35414 380 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 PMELP40967 661 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 OR3A2P47893 321 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 PTH2RP49190 550 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 MECP2P51608 486 aaKnown RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 CCL11P51671 97 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 FUT6P51993 359 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ATP1B3P54709 279 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 UBE2NP61088 152 aaKnown RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 MZT1Q08AG7 82 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 MAB21L1Q13394 359 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 GK2Q14410 553 aaPredicted RBP6.59□□□□□ -1.35
VPS39-204ENST00000561818 TATDN3Q17R31 274 aa6.59□□□□□ -1.35
VPS39-204ENST00000561818 ODF4Q2M2E3 257 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms