RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TIGD6Q17RP2 521 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 AMIGO2Q86SJ2 522 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.15□□□□□ -0.3
VPS39-203ENST00000561797 C1orf87Q8N0U7 546 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 MUC20Q8N307 709 aaPredicted RBP13.15□□□□□ -0.3
VPS39-203ENST00000561797 RFLNBQ8N5W9 214 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 CELF2-AS1Q8N7Q2 184 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 DNAJC9Q8WXX5 260 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 SGK3Q96BR1 496 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 SLC22A4Q9H015 551 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 MMADHCQ9H3L0 296 aaPredicted RBP13.15□□□□□ -0.3
VPS39-203ENST00000561797 C7orf69Q9H7B7 122 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 TMEM165Q9HC07 324 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 NOP16Q9Y3C1 178 aaKnown RBP13.15□□□□□ -0.3
VPS39-203ENST00000561797 AP4S1Q9Y587 144 aa13.15□□□□□ -0.3
VPS39-203ENST00000561797 MXRA5Q9NR99 2828 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 PPIAL4EA0A075B759 164 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 CEACAM18A8MTB9 384 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 PPIAL4DF5H284 164 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 G3V2T6 193 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 J3QLI3 93 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 TCF21O43680 179 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 GMDSO60547 372 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 FAM20BO75063 409 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 APOC1P02654 83 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 PPIAL4FP0DN26 164 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 SLC2A5P22732 501 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 FASP25445 335 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 OPRL1P41146 370 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 GATA4P43694 442 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 HCCSP53701 268 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 PTGES3Q15185 160 aaKnown RBP13.14□□□□□ -0.31
VPS39-203ENST00000561797 ZNF181Q2M3W8 571 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 GFOD2Q3B7J2 385 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 SLC35D3Q5M8T2 416 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 LIPNQ5VXI9 398 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 SLC16A9Q7RTY1 509 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 C19orf18Q8NEA5 215 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 OR11L1Q8NGX0 322 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 OTOSQ8NHW6 89 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 REEP6Q96HR9 211 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 PGAM5Q96HS1 289 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 TMEM246Q9BRR3 403 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 SP140LQ9H930 580 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 KRT84Q9NSB2 600 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 MRPL15Q9P015 296 aaKnown RBP13.14□□□□□ -0.31
VPS39-203ENST00000561797 KLHDC2Q9Y2U9 406 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 PPIAL4AQ9Y536 164 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 COL6A5A8TX70 2615 aa13.14□□□□□ -0.31
VPS39-203ENST00000561797 F5H0A9 414 aaPredicted RBP13.13□□□□□ -0.31
VPS39-203ENST00000561797 TRAPPC2LH3BP13 241 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 CIB2O75838 187 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 RGS9O75916 674 aaPredicted RBP13.13□□□□□ -0.31
VPS39-203ENST00000561797 GRPP07492 148 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 WNT2P09544 360 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 RPS2P15880 293 aaKnown RBP13.13□□□□□ -0.31
VPS39-203ENST00000561797 FAM3AP98173 230 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 ESCO2Q56NI9 601 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 PRSS45Q7RTY3 260 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 PARP8Q8N3A8 854 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 ZNF454Q8N9F8 522 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 BOLLQ8N9W6 283 aaKnown RBP13.13□□□□□ -0.31
VPS39-203ENST00000561797 DEFB108BQ8NET1 73 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 LRTOMTQ8WZ04 291 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 ERGIC1Q969X5 290 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 SPSB4Q96A44 273 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 OR10A2Q9H208 303 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 OPA3Q9H6K4 179 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 MMP26Q9NRE1 261 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 ZNF319Q9P2F9 582 aa13.13□□□□□ -0.31
VPS39-203ENST00000561797 ANKRD30BLA7E2S9 258 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 M0R129 80 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 PRKYO43930 277 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 MRPL3P09001 348 aaKnown RBP13.12□□□□□ -0.31
VPS39-203ENST00000561797 GATA3P23771 443 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 DDOSTP39656 456 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 ESRRGP62508 458 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 HOXA4Q00056 320 aaPredicted RBP13.12□□□□□ -0.31
VPS39-203ENST00000561797 LRRN1Q6UXK5 716 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 RHOUQ7L0Q8 258 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 C1QL2Q7Z5L3 287 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 KRT77Q7Z794 578 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 TEX29Q8N6K0 151 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 OR52H1Q8NGJ2 320 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 NANPQ8TBE9 248 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 Q8TCH9 128 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 DUS3LQ96G46 650 aaKnown RBP13.12□□□□□ -0.31
VPS39-203ENST00000561797 TEAD3Q99594 435 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 C19orf24Q9BVV8 132 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 SEMA6AQ9H2E6 1030 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 FN3KRPQ9HA64 309 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 RNF7Q9UBF6 113 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 MIOXQ9UGB7 285 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 LAMP5Q9UJQ1 280 aa13.12□□□□□ -0.31
VPS39-203ENST00000561797 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.11□□□□□ -0.31
VPS39-203ENST00000561797 hCG_38984A0A1B0GV85 526 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 CCDC182A6NF36 153 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 A6NLC8 198 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 PSMD9O00233 223 aa13.11□□□□□ -0.31
VPS39-203ENST00000561797 FCGR1AP12314 374 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms