RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ADAMTS17Q8TE56 1095 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 WDYHV1Q96HA8 205 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 OPALINQ96PE5 141 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 URM1Q9BTM9 101 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 RNF32Q9H0A6 362 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ESRP2Q9H6T0 727 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SMURF1Q9HCE7 757 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 LAMP3Q9UQV4 416 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 MRPS28Q9Y2Q9 187 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 A0A087WV48 116 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 AHRRA9YTQ3 701 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF732B4DXR9 585 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SIRPB1O00241 398 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 BET1O15155 118 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CNOT4O95628 575 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 F12P00748 615 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 NRASP01111 189 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ERCC1P07992 297 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CYC1P08574 325 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ZNF17P17021 662 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 BLVRBP30043 206 aaPredicted RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 BDKRB2P30411 391 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 ARR3P36575 388 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 RPS19P39019 145 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 GRB2P62993 217 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PSG4Q00888 419 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 MRPL28Q13084 256 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CDK5R1Q15078 307 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 RAB35Q15286 201 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 FIP1L1Q6UN15 594 aaKnown RBP4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PLET1Q6UQ28 207 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 LAX1Q8IWV1 398 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PDZD9Q8IXQ8 264 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 OR51A2Q8NGJ7 313 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 OR1J2Q8NGS2 313 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 OR51F2Q8NH61 342 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 GPR137Q96N19 417 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 SOX7Q9BT81 388 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 CHIAQ9BZP6 476 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 TMEM38BQ9NVV0 291 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 STARD10Q9Y365 291 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 PCDHGB6Q9Y5F9 930 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 AKAP13Q12802 2813 aa4.78□□□□□ -1.64
VPS13C-209ENST00000560637 TRAV39A0A0B4J263 110 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ARRDC5A6NEK1 342 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 A6NHS1 94 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 LMX1BO60663 402 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SFTPCP11686 197 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PRKACAP17612 351 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SRMP19623 302 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 NFYBP25208 207 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 AGTR1P30556 359 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 GABRA5P31644 462 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF85Q03923 595 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 DYNC1I2Q13409 638 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 FXNQ16595 210 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ACSF3Q4G176 576 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 TMEM211Q6ICI0 200 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CNIH2Q6PI25 160 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF782Q6ZMW2 699 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 TOMM5Q8N4H5 51 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 OR8B12Q8NGG6 310 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SLC25A40Q8TBP6 338 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ANAPC16Q96DE5 110 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ELMOD3Q96FG2 381 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SLC30A2Q9BRI3 323 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 GINS4Q9BRT9 223 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PDCD10Q9BUL8 212 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 OR2B2Q9GZK3 357 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CST11Q9H112 138 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 OCEL1Q9H607 264 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 LIN7BQ9HAP6 207 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CMAHPQ9Y471 501 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 FAM172BPA6NC97 362 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 OR6C6A6NF89 314 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SEMG1P04279 462 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SCG5P05408 212 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PGA4P0DJD7 388 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PGA3P0DJD8 388 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF708P17019 499 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 AMY2BP19961 511 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PTGER4P35408 488 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 OPRL1P41146 370 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ART1P52961 327 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SLC25A35Q3KQZ1 300 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 KCTD20Q7Z5Y7 419 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PEG10Q86TG7 708 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 Q8N402 240 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 FADS6Q8N9I5 356 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 MDS2Q8NDY4 140 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 EMG1Q92979 244 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF488Q96MN9 340 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 TINAGL1Q9GZM7 467 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CHST6Q9GZX3 395 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 C12orf10Q9HB07 376 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 FKBP14Q9NWM8 211 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 MRPL22Q9NWU5 206 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 QPCTLQ9NXS2 382 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 TAAR3PQ9P1P4 343 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 KCNN3Q9UGI6 736 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms