RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 OR52A1Q9UKL2 312 aa18.58■□□□□ 0.57
SNX1-210ENST00000560260 GTF2A1LQ9UNN4 478 aa18.58■□□□□ 0.57
SNX1-210ENST00000560260 EXOSC1Q9Y3B2 195 aaKnown RBP18.58■□□□□ 0.57
SNX1-210ENST00000560260 ACOD1A6NK06 481 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 IQCF6A8MYZ5 107 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 IGHV4-39P01824 125 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 SLC35A2P78381 396 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 FAM3AP98173 230 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 WDR38Q5JTN6 314 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 BHLHE23Q8NDY6 225 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 GSX2Q9BZM3 304 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 MOB1AQ9H8S9 216 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 EDARQ9UNE0 448 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 PMF1-BGLAPU3KQ54 211 aa18.57■□□□□ 0.56
SNX1-210ENST00000560260 CD300LBA8K4G0 201 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 E9PI62 339 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 CCDC159P0C7I6 412 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 CRHBPP24387 322 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 NANOS3P60323 173 aaKnown RBP18.56■□□□□ 0.56
SNX1-210ENST00000560260 BCL2L15Q5TBC7 163 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 ELMOD2Q8IZ81 293 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 ZNF786Q8N393 782 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 STX19Q8N4C7 294 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 OR56B2PQ8NGI1 322 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 SPRYD4Q8WW59 207 aaPredicted RBP18.56■□□□□ 0.56
SNX1-210ENST00000560260 VRK1Q99986 396 aaPredicted RBP18.56■□□□□ 0.56
SNX1-210ENST00000560260 Q9H521 79 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 MSL2Q9HCI7 577 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 SNX5Q9Y5X3 404 aa18.56■□□□□ 0.56
SNX1-210ENST00000560260 A0A0U1RQV5 110 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 PTGES3LE9PB15 166 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 NCR1O76036 304 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 LY6HO94772 140 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 CDK1P06493 297 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 CSNK2BP67870 215 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 KCTD20Q7Z5Y7 419 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 KRTAP1-3Q8IUG1 177 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 ZNF485Q8NCK3 441 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 OR2G2Q8NGZ5 317 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 OR51E1Q8TCB6 317 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 DUSP21Q9H596 190 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 OPA3Q9H6K4 179 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 SCN3BQ9NY72 215 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 ERVK-18Q9QC07 812 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 CAB39Q9Y376 341 aaPredicted RBP18.55■□□□□ 0.56
SNX1-210ENST00000560260 CCDC168Q8NDH2 2452 aa18.55■□□□□ 0.56
SNX1-210ENST00000560260 A0A1B0GTI1 187 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 C17orf100A8MU93 164 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 IGHV1-46P01743 117 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 MYL12AP19105 171 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 ACKR3P25106 362 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 MAGEB1P43366 347 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 GSK3AP49840 483 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 ZNF81P51508 661 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 ATP5J2P56134 94 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 XAF1Q6GPH4 301 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 FDX2Q6P4F2 183 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 OR8G5Q8NG78 346 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 MRPL48Q96GC5 212 aaKnown RBP18.54■□□□□ 0.56
SNX1-210ENST00000560260 RGCCQ9H4X1 137 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 GPR84Q9NQS5 396 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 TEX15Q9BXT5 2789 aa18.54■□□□□ 0.56
SNX1-210ENST00000560260 GGT3PA6NGU5 568 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 P2RY10O00398 339 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 MLNRO43193 412 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 LALBAP00709 142 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 TACSTD2P09758 323 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 BMP4P12644 408 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 SELEP16581 610 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 OR8B8Q15620 311 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 MOGQ16653 247 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 ODF4Q2M2E3 257 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 SPRNQ5BIV9 151 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 LRRC75A-AS1Q8N1F1 130 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 KLHL36Q8N4N3 616 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 OR52N1Q8NH53 320 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 SLC30A2Q9BRI3 323 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 MS4A5Q9H3V2 200 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 FRRS1LQ9P0K9 344 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 CGGBP1Q9UFW8 167 aaPredicted RBP18.53■□□□□ 0.56
SNX1-210ENST00000560260 FBXO9Q9UK97 447 aaPredicted RBP18.53■□□□□ 0.56
SNX1-210ENST00000560260 TPRKBQ9Y3C4 175 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 VPS13CQ709C8 3753 aa18.53■□□□□ 0.56
SNX1-210ENST00000560260 ARID1AO14497 2285 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 PRRC2AP48634 2157 aaKnown RBP18.52■□□□□ 0.56
SNX1-210ENST00000560260 H0YL77 283 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 SPRY3O43610 288 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 MT-ND2P03891 347 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 MT-ND5P03915 603 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 HTR1AP08908 422 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 GTF2A1P52655 376 aaPredicted RBP18.52■□□□□ 0.56
SNX1-210ENST00000560260 IRF3Q14653 427 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 RBM48Q5RL73 367 aaKnown RBP18.52■□□□□ 0.56
SNX1-210ENST00000560260 TRMT61AQ96FX7 289 aaKnown RBP18.52■□□□□ 0.56
SNX1-210ENST00000560260 FAM71F1Q96KD3 344 aaPredicted RBP18.52■□□□□ 0.56
SNX1-210ENST00000560260 FOXC2Q99958 501 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 PPP1R3EQ9H7J1 279 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 GPR160Q9UJ42 338 aa18.52■□□□□ 0.56
SNX1-210ENST00000560260 CHD3Q12873 2000 aaKnown RBP18.52■□□□□ 0.56
SNX1-210ENST00000560260 OTOGQ6ZRI0 2925 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms