RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 ZNF283Q8N7M2 679 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 BPIFB6Q8NFQ5 453 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 OR8J1Q8NGP2 316 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 ZNF420Q8TAQ5 688 aaPredicted RBP7.96□□□□□ -1.14
LDLR-211ENST00000560173 RDH5Q92781 318 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 YIPF5Q969M3 257 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 CNN2Q99439 309 aaKnown RBP7.96□□□□□ -1.14
LDLR-211ENST00000560173 DUSP21Q9H596 190 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 ADGRL4Q9HBW9 690 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 CNOT2Q9NZN8 540 aaKnown RBP7.96□□□□□ -1.14
LDLR-211ENST00000560173 ZDHHC8Q9ULC8 765 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 PCDHGB5Q9Y5G0 923 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 JMJD1CQ15652 2540 aa7.96□□□□□ -1.14
LDLR-211ENST00000560173 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.96□□□□□ -1.146e-14■■■■□ 26.1
LDLR-211ENST00000560173 IGHV4-61A0A0C4DH41 118 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 CCDC160A6NGH7 325 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 IQCF6A8MYZ5 107 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 PRR32B1ATL7 298 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 RGS10O43665 173 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 LY6G6DO95868 133 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 H2BFMP0C1H6 154 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 SELEP16581 610 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 ACHEP22303 614 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 USF1P22415 310 aaPredicted RBP7.95□□□□□ -1.14
LDLR-211ENST00000560173 COL8A2P25067 703 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 HSD11B1P28845 292 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 HTR1FP30939 366 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 HCCSP53701 268 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 PRSS12P56730 875 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 ZNF92Q03936 586 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 TSTQ16762 297 aaKnown RBP7.95□□□□□ -1.14
LDLR-211ENST00000560173 SLC25A30Q5SVS4 291 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 GLYATL3Q5SZD4 288 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 CLEC9AQ6UXN8 241 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 KCTD8Q6ZWB6 473 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 PRSS48Q7RTY5 328 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 SATL1Q86VE3 508 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 ENTHD1Q8IYW4 607 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 OR5AS1Q8N127 324 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 ZNF540Q8NDQ6 660 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 OR8G5Q8NG78 346 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 OR2AE1Q8NHA4 323 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 THEM6Q8WUY1 208 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 ZNF582Q96NG8 517 aaPredicted RBP7.95□□□□□ -1.14
LDLR-211ENST00000560173 DIRC2Q96SL1 478 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 BCL7BQ9BQE9 202 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 BPESC1Q9GZL8 116 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 CHODLQ9H9P2 273 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 SAP30LQ9HAJ7 183 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 HAO2Q9NYQ3 351 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 DNAJC27Q9NZQ0 273 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 H2AFY2Q9P0M6 372 aaPredicted RBP7.95□□□□□ -1.14
LDLR-211ENST00000560173 WARS2Q9UGM6 360 aaKnown RBP7.95□□□□□ -1.14
LDLR-211ENST00000560173 LAMP5Q9UJQ1 280 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 COPS3Q9UNS2 423 aa7.95□□□□□ -1.14
LDLR-211ENST00000560173 ANK3Q12955 4377 aaKnown RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 IGHV1-69-2A0A0G2JMI3 117 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 A0A1B0GWJ7 208 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 PTGES3LE9PB15 166 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 TPD52L2O43399 206 aaKnown RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 XRCC2O43543 280 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 CDC14BO60729 498 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 LILRA1O75019 489 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 APOC1P02654 83 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 HEXAP06865 529 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 ANXA2P07355 339 aaKnown RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 PIPP12273 146 aaPredicted RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 CRYBB2P43320 205 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 ZNF121P58317 390 aaPredicted RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 PSMA6P60900 246 aaKnown RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 SLC35A2P78381 396 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 TNFAIP6P98066 277 aaPredicted RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 ROM1Q03395 351 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 OCLNQ16625 522 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 SPRNQ5BIV9 151 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 DEGS2Q6QHC5 323 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 LRRN1Q6UXK5 716 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 PGAP1Q75T13 922 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 MRPL21Q7Z2W9 205 aaKnown RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 SLC35F2Q8IXU6 374 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 SPARTQ8N0X7 666 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 RFLNBQ8N5W9 214 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 BHLHE23Q8NDY6 225 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 OR2Z1Q8NG97 314 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 OR52H1Q8NGJ2 320 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 CNIH3Q8TBE1 160 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 ASB17Q8WXJ9 295 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 RORBQ92753 470 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 UBE2FQ969M7 185 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 SPSB4Q96A44 273 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 ELMOD3Q96FG2 381 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 MNTQ99583 582 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 SLC30A2Q9BRI3 323 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 EGLN1Q9GZT9 426 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 NIPAL2Q9H841 368 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 SP140LQ9H930 580 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 ZNF275Q9NSD4 429 aaPredicted RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 DECR2Q9NUI1 292 aa7.94□□□□□ -1.14
LDLR-211ENST00000560173 RSL24D1Q9UHA3 163 aaKnown RBP7.94□□□□□ -1.14
LDLR-211ENST00000560173 RPL36Q9Y3U8 105 aaKnown RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms