RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 LPLP06858 475 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 CELA3AP09093 270 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 GDF1P27539 372 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 FAUP35544 74 aaKnown RBP9.35□□□□□ -0.91
CUX1-217ENST00000558836 DLSTP36957 453 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 CYB561P49447 251 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 NDUFA5Q16718 116 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 CDNFQ49AH0 187 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 SFRP5Q5T4F7 317 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 LINC00696Q6ZRV3 163 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 TMEM123Q8N131 208 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 MUC20Q8N307 709 aaPredicted RBP9.35□□□□□ -0.91
CUX1-217ENST00000558836 SLC22A24Q8N4F4 322 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 NAXEQ8NCW5 288 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 LILRB1Q8NHL6 650 aaPredicted RBP9.35□□□□□ -0.91
CUX1-217ENST00000558836 LYZL4Q96KX0 146 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 SGCZQ96LD1 299 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 MICU1Q9BPX6 476 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 STRADBQ9C0K7 418 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 NELFAQ9H3P2 528 aa9.35□□□□□ -0.91
CUX1-217ENST00000558836 CCDC187A0A096LP49 1063 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 IGKV1-9A0A0C4DH69 117 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 EIF1BO60739 113 aaKnown RBP9.34□□□□□ -0.91
CUX1-217ENST00000558836 CD59P13987 128 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 B4GALT1P15291 398 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 FAHP16930 419 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 CSNK2A1P68400 391 aaPredicted RBP9.34□□□□□ -0.91
CUX1-217ENST00000558836 SSPNQ14714 243 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 DBX2Q6ZNG2 339 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 C1QL2Q7Z5L3 287 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 FJX1Q86VR8 437 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 OR5AS1Q8N127 324 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 FTMTQ8N4E7 242 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 NKAIN3Q8N8D7 197 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 OR10K1Q8NGX5 313 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 OR2AE1Q8NHA4 323 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 ABHD3Q8WU67 409 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 NABP1Q96AH0 204 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 NAA11Q9BSU3 229 aaPredicted RBP9.34□□□□□ -0.91
CUX1-217ENST00000558836 DPCDQ9BVM2 203 aaPredicted RBP9.34□□□□□ -0.91
CUX1-217ENST00000558836 POFUT1Q9H488 388 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 TAS2R8Q9NYW2 309 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 LRFN1Q9P244 771 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 MGAQ8IWI9 3026 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 METTL21EPA6NDL7 271 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 TTLL8A6PVC2 850 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 RGS19P49795 217 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 CAMK2BQ13554 666 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 ZNF626Q68DY1 528 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 HDDC2Q7Z4H3 204 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 TRAPPC6BQ86SZ2 158 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 GGNQ86UU5 652 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 OR10D3Q8NH80 312 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 SIGLEC12Q96PQ1 595 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 TAAR9Q96RI9 348 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 SLC17A5Q9NRA2 495 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 PIPOXQ9P0Z9 390 aa9.34□□□□□ -0.91
CUX1-217ENST00000558836 SVILO95425 2214 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 LOC102725191A0A1B0GVB3 256 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ZNF736B4DX44 427 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 SOCS1O15524 211 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 NOS1APO75052 506 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 CD96P40200 585 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 H2BFSP57053 126 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 TSPAN5P62079 268 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 SNAI3Q3KNW1 292 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 C9orf135Q5VTT2 229 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 DCAF12L2Q5VW00 463 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 CDCP2Q5VXM1 449 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 SLC36A1Q7Z2H8 476 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 GJC3Q8NFK1 279 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 TMEM41AQ96HV5 264 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 SLC6A7Q99884 636 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 IL17BQ9UHF5 180 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 SCP2D1Q9UJQ7 156 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 RAB22AQ9UL26 194 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 OTOGLQ3ZCN5 2332 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 COL27A1Q8IZC6 1860 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 A0A0A6YYD4 124 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 PRAF2O60831 178 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 CD37P11049 281 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ICAM2P13598 275 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 FKBP2P26885 142 aaKnown RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 TAS2R19P59542 299 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ACTBP60709 375 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ACTG1P63261 375 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 QRFPP83859 136 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ZNF239Q16600 458 aaKnown RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 ZNF260Q3ZCT1 412 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ZNF774Q6NX45 483 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 BPIFB2Q8N4F0 458 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 AKR7LQ8NHP1 331 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 TNFAIP8L1Q8WVP5 186 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 TMEM54Q969K7 222 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 PIGTQ969N2 578 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 MRPS28Q9Y2Q9 187 aaKnown RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 FLVCR1Q9Y5Y0 555 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 KIAA1549Q9HCM3 1950 aa9.33□□□□□ -0.92
CUX1-217ENST00000558836 ZFHX2Q9C0A1 2572 aaPredicted RBP9.33□□□□□ -0.92
CUX1-217ENST00000558836 ANKRD34BA5PLL1 514 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms