RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 SLC25A44Q96H78 314 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 ARL5BQ96KC2 179 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 PRRG4Q9BZD6 226 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 OR51V1Q9H2C8 321 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 PIGMQ9H3S5 423 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ZNF703Q9H7S9 590 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 B3GAT2Q9NPZ5 323 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 HINT3Q9NQE9 182 aaKnown RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 KLHL1Q9NR64 748 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 GLRX2Q9NS18 164 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 ASB6Q9NWX5 421 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 EMC3Q9P0I2 261 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 KLHL9Q9P2J3 617 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 SEC14L4Q9UDX3 406 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 KCNG2Q9UJ96 466 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 CAB39Q9Y376 341 aaPredicted RBP4.5□□□□□ -1.69
LDLR-209ENST00000558528 GRIP1Q9Y3R0 1128 aa4.5□□□□□ -1.69
LDLR-209ENST00000558528 DAPL1A0PJW8 107 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 CCDC160A6NGH7 325 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 LRRC3CA6NJW4 275 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ZNF670-ZNF695F2Z2N8 137 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 G3V3Y1 287 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 TFECO14948 347 aaPredicted RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 ST8SIA3O43173 380 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 EFNA2O43921 213 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SELENOFO60613 162 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 AKR7A3O95154 331 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 IGHG3P01860 377 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 TFAP2AP05549 437 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SBK2P0C263 348 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SMIM18P0DKX4 95 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SPP1P10451 314 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 GABRA1P14867 456 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ZNF708P17019 499 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ZNF24P17028 368 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 PSMA1P25786 263 aaKnown RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 RANBP1P43487 201 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 IER3P46695 156 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 TMBIM6P55061 237 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 BDH1Q02338 343 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 EMX1Q04741 257 aaPredicted RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 GAGE2BQ13066 116 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 TNK1Q13470 666 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 FHL1Q13642 323 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 CRMP1Q14194 572 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 GGTLC2Q14390 218 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SPHARQ15513 63 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 TRAM1Q15629 374 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 INPP5JQ15735 1006 aaPredicted RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 STK11Q15831 433 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ACKR1Q16570 336 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 EIF2S3LQ2VIR3 472 aaKnown RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 GAGE2EQ4V326 116 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ATP1A1-AS1Q5TC04 95 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 PRR27Q6MZM9 219 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 GAGE2AQ6NT46 116 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 NIPAL3Q6P499 406 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 KCTD18Q6PI47 426 aaPredicted RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 DEGS2Q6QHC5 323 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 PLEKHG7Q6ZR37 379 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 Q6ZS92 163 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 RHOUQ7L0Q8 258 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ABHD12BQ7Z5M8 362 aaPredicted RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 MEX3DQ86XN8 651 aaKnown RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 SYS1Q8N2H4 156 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 NANOGP1Q8N7R0 232 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 TMEM99Q8N816 258 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SDR9C7Q8NEX9 313 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SLC24A4Q8NFF2 622 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 OR52I1Q8NGK6 324 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 OR52N1Q8NH53 320 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 NEIL3Q8TAT5 605 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 RAB2BQ8WUD1 216 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 SMPDL3BQ92485 455 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 NSMAFQ92636 917 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 THRSPQ92748 146 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 LGALS12Q96DT0 336 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 Q96M85 177 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 NMNAT3Q96T66 252 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 CNN2Q99439 309 aaKnown RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 COQ7Q99807 217 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 OR11A1Q9GZK7 315 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 YIPF3Q9GZM5 350 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ZDHHC11Q9H8X9 412 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 AMBNQ9NP70 447 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ACOT13Q9NPJ3 140 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 DEPPQ9NTK1 212 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 OR6C3Q9NZP0 311 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 DNAJC27Q9NZQ0 273 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ERVK-18Q9QC07 812 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 GAGE2DQ9UEU5 116 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 KCNN3Q9UGI6 736 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 IL20RAQ9UHF4 553 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 LAMP5Q9UJQ1 280 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 B9D1Q9UPM9 204 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 ZNF175Q9Y473 711 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 NUP210LQ5VU65 1888 aa4.49□□□□□ -1.69
LDLR-209ENST00000558528 TP53BP1Q12888 1972 aaPredicted RBP4.49□□□□□ -1.69
LDLR-209ENST00000558528 MED13Q9UHV7 2174 aa4.48□□□□□ -1.69
LDLR-209ENST00000558528 SNRNP200O75643 2136 aaKnown RBP4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms