RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 IGKV3-11P04433 115 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 IFNA16P05015 189 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ANXA4P09525 319 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 TFPTP0C1Z6 253 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 PIRTP0C851 137 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 GFAPP14136 432 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CNR1P21554 472 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 HSD11B1P28845 292 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CD80P33681 288 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 HSPA9P38646 679 aaKnown RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 GPR1P46091 355 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 UQCRFS1P47985 274 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 MARCKSL1P49006 195 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 RAB9AP51151 201 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 AP3S2P59780 193 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ACTBP60709 375 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 MAGOHP61326 146 aaKnown RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ACTA2P62736 377 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ACTG1P63261 375 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ACTG2P63267 376 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ACTC1P68032 377 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ACTA1P68133 377 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 RIPPLY1Q0D2K3 151 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SMCO1Q147U7 214 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 IGFBP7Q16270 282 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 MICAQ29983 383 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 NDUFAF6Q330K2 333 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 COQ5Q5HYK3 327 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 C6orf183Q5T699 404 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 DDI2Q5TDH0 399 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF470Q6ECI4 717 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ELP2Q6IA86 826 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF544Q6NX49 715 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 LRRC8BQ6P9F7 803 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 IGFL2Q6UWQ7 119 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 FAM151BQ6UXP7 276 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SIGLEC15Q6ZMC9 328 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CERS6Q6ZMG9 384 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SLC35D2Q76EJ3 337 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SMIM15Q7Z3B0 74 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 P4HA3Q7Z4N8 544 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CYP4Z1Q86W10 505 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 VRK2Q86Y07 508 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 LRRC8AQ8IWT6 810 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CENPLQ8N0S6 344 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 PDIK1LQ8N165 341 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ZNF786Q8N393 782 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 LRRC17Q8N6Y2 441 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 OR2D3Q8NGH3 330 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 OR56B1Q8NGI3 324 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 OR13C9Q8NGT0 318 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 OR4F5Q8NH21 305 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 DTX3LQ8TDB6 740 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SELENOMQ8WWX9 145 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CPNE4Q96A23 557 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 TMEM159Q96B96 161 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 TADA1Q96BN2 335 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CITED1Q99966 193 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CENPKQ9BS16 269 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 DDA1Q9BW61 102 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 GSDMCQ9BYG8 508 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ANKRD60Q9BZ19 345 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 BCL2L14Q9BZR8 327 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ALX4Q9H161 411 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 OPN3Q9H1Y3 402 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 GOLPH3Q9H4A6 298 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 COG4Q9H9E3 785 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 TIGARQ9NQ88 270 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 MRPL22Q9NWU5 206 aaKnown RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 TAS2R16Q9NYV7 291 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 STMN3Q9NZ72 180 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 PDP1Q9P0J1 537 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 STOX2Q9P2F5 926 aaPredicted RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 UVRAGQ9P2Y5 699 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 SLC23A2Q9UGH3 650 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 CRLS1Q9UJA2 301 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ANAPC7Q9UJX3 599 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 NUP50Q9UKX7 468 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 RPH3ALQ9UNE2 315 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 DIMT1Q9UNQ2 313 aaKnown RBP3.33□□□□□ -1.88
PRPF39-209ENST00000556353 KCNK6Q9Y257 313 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 ACOT9Q9Y305 439 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 HEY1Q9Y5J3 304 aa3.33□□□□□ -1.88
PRPF39-209ENST00000556353 A0A1B0GVG6 124 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SDR42E2A6NKP2 422 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 WASHC1A8K0Z3 465 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 F8W036 122 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 TMX2-CTNND1H3BSU7 103 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 CLOCKO15516 846 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 RAD1O60671 282 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 STX11O75558 287 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 RAD51DO75771 328 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 STK17BO94768 372 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SNRPCP09234 159 aaKnown RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 ICAM2P13598 275 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 TUBG1P23258 451 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 DTYMKP23919 212 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 CD82P27701 267 aa3.32□□□□□ -1.88
PRPF39-209ENST00000556353 OTX1P32242 354 aaPredicted RBP3.32□□□□□ -1.88
PRPF39-209ENST00000556353 SLC1A2P43004 574 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms