RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 USP43Q70EL4 1123 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 MOGAT3Q86VF5 341 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 CPOQ8IVL8 374 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 OR2AE1Q8NHA4 323 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 ZFAND2BQ8WV99 257 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 ADAT1Q9BUB4 502 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 PRRG3Q9BZD7 231 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 OR51V1Q9H2C8 321 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 NIPAL2Q9H841 368 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 TMEM165Q9HC07 324 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 KIF17Q9P2E2 1029 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 MIOXQ9UGB7 285 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 OPN4Q9UHM6 478 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 ZNF391Q9UJN7 358 aa13.46□□□□□ -0.25
CCDC88C-209ENST00000554872 hCG_38984A0A1B0GV85 526 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 GGT3PA6NGU5 568 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 TIPRLO75663 272 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 AVPP01185 164 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 LYNP07948 512 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 WNT2P09544 360 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 FCGR1AP12314 374 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 ZNF12P17014 697 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 CA6P23280 308 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 ZFP36P26651 326 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 DAPP51397 102 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 CRISP1P54107 249 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 PRSS12P56730 875 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 SNCBQ16143 134 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 TUSC1Q2TAM9 212 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 ESCO2Q56NI9 601 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 OR56B2PQ8NGI1 322 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 OR11L1Q8NGX0 322 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 ZNF420Q8TAQ5 688 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 ZMYND19Q96E35 227 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 PLEKHA8Q96JA3 519 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 AMELYQ99218 206 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 YIPF3Q9GZM5 350 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 METTL17Q9H7H0 456 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 FN3KRPQ9HA64 309 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 ENOPH1Q9UHY7 261 aa13.45□□□□□ -0.26
CCDC88C-209ENST00000554872 CYB5R3P00387 301 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 PPIAL4GP0DN37 164 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 SLC2A1P11166 492 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 IRF2P14316 349 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 ALOX5APP20292 161 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 FASP25445 335 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 ZNF121P58317 390 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 PSMA6P60900 246 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 LCN2P80188 198 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 EFNB1P98172 346 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 FAM3AP98173 230 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 PAX2Q02962 417 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 HNRNPA0Q13151 305 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 OR8B8Q15620 311 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 C1orf146Q5VVC0 180 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 KDM4DQ6B0I6 523 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 DEGS2Q6QHC5 323 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 DCDC5Q6ZRR9 648 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 KRT74Q7RTS7 529 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 SLC16A9Q7RTY1 509 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 DEFB108BQ8NET1 73 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 SEMA6DQ8NFY4 1073 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 NANPQ8TBE9 248 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 DACT3Q96B18 629 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 OTULINQ96BN8 352 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 SGK3Q96BR1 496 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 TMEM246Q9BRR3 403 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 OR10A2Q9H208 303 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 C7orf69Q9H7B7 122 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 TRIM36Q9NQ86 728 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 PPIAL4AQ9Y536 164 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 AP4S1Q9Y587 144 aa13.44□□□□□ -0.26
CCDC88C-209ENST00000554872 WNK2Q9Y3S1 2297 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 LOC105371242A0A075B767 164 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 ACOD1A6NK06 481 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 G3V2T6 193 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 SELENOFO60613 162 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 FAM20BO75063 409 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 ANXA2P07355 339 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 H2BFMP0C1H6 154 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 ADRA2CP18825 462 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 EPHA1P21709 976 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 DCTDP32321 178 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 PTGES3Q15185 160 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 TIGD6Q17RP2 521 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 KLHL12Q53G59 568 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 LCN1P1Q5VSP4 162 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 TMEM236Q5W0B7 351 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 ASRGL1Q7L266 308 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 ZDHHC13Q8IUH4 622 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 FTMTQ8N4E7 242 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 CSNK2A3Q8NEV1 391 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 BBS1Q8NFJ9 593 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 NEIL1Q96FI4 390 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 REEP6Q96HR9 211 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 C19orf24Q9BVV8 132 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 SSBP3Q9BWW4 388 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 OSBPL10Q9BXB5 764 aa13.43□□□□□ -0.26
CCDC88C-209ENST00000554872 ABCB9Q9NP78 766 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms