RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 KCNN3Q9UGI6 736 aa12.52□□□□□ -0.41
SHMT2-210ENST00000553950 ENPP5Q9UJA9 477 aa12.52□□□□□ -0.41
SHMT2-210ENST00000553950 POU2F3Q9UKI9 436 aa12.52□□□□□ -0.41
SHMT2-210ENST00000553950 NOP16Q9Y3C1 178 aaKnown RBP12.52□□□□□ -0.41
SHMT2-210ENST00000553950 RNF115Q9Y4L5 304 aa12.52□□□□□ -0.41
SHMT2-210ENST00000553950 SIRT4Q9Y6E7 314 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-210ENST00000553950 TRBV5-5A0A0J9YX44 114 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 hCG_38984A0A1B0GV85 526 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 TRDV1A0A1B0GX56 115 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 PRSS44E7EML9 344 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 ATP6V1G2-DDX39BF2Z307 99 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 ZNF701M0R085 212 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-210ENST00000553950 P2RY10O00398 339 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 AIREO43918 545 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 FAM157BP0CG42 384 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 RAC2P15153 192 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 ZNF20P17024 532 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 MYL9P24844 172 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 GCH1P30793 250 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 CALCRP30988 508 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 FGF9P31371 208 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-210ENST00000553950 GLRXP35754 106 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 TMBIM6P55061 237 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 DOC2BQ14184 412 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 OR8B8Q15620 311 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 ODF4Q2M2E3 257 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 ZNF718Q3SXZ3 478 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 Q6ZSR3 168 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 PLPP7Q8NBV4 271 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 SEMA6DQ8NFY4 1073 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 PP6455Q8WZ26 134 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 TECTBQ96PL2 329 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 SPOCK3Q9BQ16 436 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 FAM192AQ9GZU8 254 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 SLITRK2Q9H156 845 aa12.51□□□□□ -0.41
SHMT2-210ENST00000553950 EXOSC4Q9NPD3 245 aaKnown RBP12.51□□□□□ -0.41
SHMT2-210ENST00000553950 CGGBP1Q9UFW8 167 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-210ENST00000553950 SF3B6Q9Y3B4 125 aaKnown RBP12.51□□□□□ -0.41
SHMT2-210ENST00000553950 GABRPO00591 440 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 SC5DO75845 299 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 FSTP19883 344 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 GADD45AP24522 165 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 THBS4P35443 961 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 NKX6-1P78426 367 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-210ENST00000553950 RIPPLY1Q0D2K3 151 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 ACSM3Q53FZ2 586 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 ZMAT1Q5H9K5 638 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 GPR107Q5VW38 600 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 MBNL2Q5VZF2 373 aaKnown RBP12.5□□□□□ -0.41
SHMT2-210ENST00000553950 MEX3BQ6ZN04 569 aaKnown RBP12.5□□□□□ -0.41
SHMT2-210ENST00000553950 NAA40Q86UY6 237 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 CLVS1Q8IUQ0 354 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-210ENST00000553950 ACBD4Q8NC06 268 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 OR2AE1Q8NHA4 323 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 TMEM106AQ96A25 262 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 FAM71F1Q96KD3 344 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-210ENST00000553950 REPIN1Q9BWE0 567 aaKnown RBP12.5□□□□□ -0.41
SHMT2-210ENST00000553950 PTTG3PQ9NZH4 202 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 CRIM1Q9NZV1 1036 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 V9GYS6 101 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 UBR5O95071 2799 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-210ENST00000553950 RELNP78509 3460 aa12.5□□□□□ -0.41
SHMT2-210ENST00000553950 CADP27708 2225 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 LOC100506127A0A0U1RQW1 187 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 ZNF816-ZNF321PA0A0X1KG74 233 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 A0A1B0GTI1 187 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 DPRXA6NFQ7 191 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 CCDC160A6NGH7 325 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 GGT3PA6NGU5 568 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 PYCARD-AS1I3L0S3 204 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 SLC22A1O15245 554 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 NGFP01138 241 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 RANBP1P43487 201 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 PPP3R1P63098 170 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 ZNF92Q03936 586 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 GK2Q14410 553 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-210ENST00000553950 MOGQ16653 247 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 HSD17B12Q53GQ0 312 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 C22orf34Q6ZV56 151 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 KBTBD8Q8NFY9 601 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 SLC25A40Q8TBP6 338 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 RGP1Q92546 391 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-210ENST00000553950 TMEM203Q969S6 136 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 TMIGD2Q96BF3 282 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 SGK3Q96BR1 496 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 CPNE2Q96FN4 548 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-210ENST00000553950 KCTD7Q96MP8 289 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 DERL3Q96Q80 235 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 OR14A2Q96R54 314 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 CHCHD6Q9BRQ6 235 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 SLC22A4Q9H015 551 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 OR51B6Q9H340 312 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 ZNF275Q9NSD4 429 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-210ENST00000553950 ZNF319Q9P2F9 582 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 GPR160Q9UJ42 338 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 FBXO9Q9UK97 447 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-210ENST00000553950 STARD10Q9Y365 291 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 CMAHPQ9Y471 501 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 ATP23Q9Y6H3 246 aa12.49□□□□□ -0.41
SHMT2-210ENST00000553950 PLCE1Q9P212 2302 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms