RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 C10orf35Q96D05 121 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 DEFB127Q9H1M4 99 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 EXO5Q9H790 373 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 HRASLSQ9HDD0 168 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 KLK11Q9UBX7 282 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 KDM4BO94953 1096 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 FARS2O95363 451 aaKnown RBP23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 SPINK2P20155 84 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 GIFP27352 417 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 GFOD2Q3B7J2 385 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 OLFML2AQ68BL7 652 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 ZNF774Q6NX45 483 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 SLC7A6Q92536 515 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 FBLN5Q9UBX5 448 aa23.06■■□□□ 1.28
CCDC88C-205ENST00000553403 CNTRLQ7Z7A1 2325 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 C5orf63A6NC05 138 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 H7C417 338 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 DHRS3O75911 302 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 MT-ND4P03905 459 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 YES1P07947 543 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 DBHP09172 617 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 CLN3Q13286 438 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 CAMK2BQ13554 666 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 RNFT1Q5M7Z0 435 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 ZC3HAV1Q7Z2W4 902 aaKnown RBP23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 WDYHV1Q96HA8 205 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 SCNM1Q9BWG6 230 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 OR2H1Q9GZK4 316 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 CALHM2Q9HA72 323 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 SLC7A10Q9NS82 523 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 MTFP1Q9UDX5 166 aa23.05■■□□□ 1.28
CCDC88C-205ENST00000553403 SULT1C2O00338 296 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 RBBP9O75884 186 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 ALX3O95076 343 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 DHFRP00374 187 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 PTHLHP12272 177 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 ZNF93P35789 620 aaPredicted RBP23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 RAG2P55895 527 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 SSBP1Q04837 148 aaKnown RBP23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 BTN2A1Q7KYR7 527 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 SKA3Q8IX90 412 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 WNT5BQ9H1J7 359 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 TAS2R8Q9NYW2 309 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 ZNF221Q9UK13 617 aa23.04■■□□□ 1.28
CCDC88C-205ENST00000553403 MTRF1O75570 445 aaKnown RBP23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 PRSS3P35030 304 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 QRFPP83859 136 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 PSG4Q00888 419 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 MCEMP1Q8IX19 187 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 ST6GAL2Q96JF0 529 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 MRPL15Q9P015 296 aaKnown RBP23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 ZNF587BE7ETH6 402 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 TBRG1Q3YBR2 411 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 RAB12Q6IQ22 244 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 ZNF627Q7L945 461 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 PP6455Q8WZ26 134 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 SPRR3Q9UBC9 169 aa23.03■■□□□ 1.28
CCDC88C-205ENST00000553403 TPRP12270 2363 aaKnown RBP23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 METTL21EPA6NDL7 271 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 DHRS7CA6NNS2 312 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 MMP7P09237 267 aaPredicted RBP23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 PRF1P14222 555 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 HTR5AP47898 357 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 PMPCAQ10713 525 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 C3AR1Q16581 482 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 ST3GAL2Q16842 350 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 UTS2BQ765I0 119 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 AKR7LQ8NHP1 331 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 SSC4DQ8WTU2 575 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 ACTR6Q9GZN1 396 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 NUDT15Q9NV35 164 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 ATPIF1Q9UII2 106 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 CSAG2Q9Y5P2 127 aa23.02■■□□□ 1.28
CCDC88C-205ENST00000553403 SCGNO76038 276 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 ARF1P84077 181 aaKnown RBP23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 ATAD3CQ5T2N8 411 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 PLXDC2Q6UX71 529 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 OR2W3Q7Z3T1 314 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 CDH24Q86UP0 819 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 FAM46BQ96A09 425 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 APH1AQ96BI3 265 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 SGK3Q96BR1 496 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 SCPEP1Q9HB40 452 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 GP6Q9HCN6 339 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 ACACBO00763 2458 aa23.01■■□□□ 1.27
CCDC88C-205ENST00000553403 TRAV17A0A0B4J275 112 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 CEACAM4O75871 244 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 IGHV3-9P01782 118 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 IGHG3P01860 377 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 CSF1P09603 554 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 PATE4P0C8F1 98 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 CCR6P51684 374 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 DEFB109BQ30KR1 87 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 SNAI3Q3KNW1 292 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 AWAT2Q6E213 333 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 OR10K2Q6IF99 312 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 ANGPTL5Q86XS5 388 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 PAQR4Q8N4S7 273 aaPredicted RBP23■■□□□ 1.27
CCDC88C-205ENST00000553403 FGFBP3Q8TAT2 258 aa23■■□□□ 1.27
CCDC88C-205ENST00000553403 GPX8Q8TED1 209 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms