RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PDP1Q9P0J1 537 aaPredicted RBP3.01□□□□□ -1.93
LIMA1-208ENST00000551691 SENP1Q9P0U3 644 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 PRODH2Q9UF12 536 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 SLC7A8Q9UHI5 535 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 PHF11Q9UIL8 331 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 DNAJC12Q9UKB3 198 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 NUP50Q9UKX7 468 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 RNF24Q9Y225 148 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 PEX16Q9Y5Y5 336 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 HEBP2Q9Y5Z4 205 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 DOCK7Q96N67 2140 aa3.01□□□□□ -1.93
LIMA1-208ENST00000551691 IGLV4-3A0A075B6K6 122 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 IGHV3OR16-12A0A075B7B8 117 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 IGHV2-70DA0A0C4DH43 119 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 MPTX1A8MV57 137 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 ZNF487B1APH4 448 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 TRDCB7Z8K6 153 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 E9PLD3 99 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 PES1O00541 588 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 PRKYO43930 277 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 RAMP3O60896 148 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 UPK3AO75631 287 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 OXSR1O95747 527 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 KRT6AP02538 564 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 HLA-DQB2P05538 268 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 S100A9P06702 114 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 CD55P08174 381 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 OR8G3PP0DMU2 310 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 CNR1P21554 472 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 USF1P22415 310 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 HMOX2P30519 316 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 CDH5P33151 784 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 HSPA9P38646 679 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 LEPP41159 167 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 CRYBB2P43320 205 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 ATP4BP51164 291 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 PRKXP51817 358 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 GSCP56915 257 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 OR4D2P58180 307 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 GNB1P62873 340 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 IRX1P78414 480 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 ST3GAL3Q11203 375 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 ZNF154Q13106 437 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 NSDHLQ15738 373 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 PGGHGQ32M88 737 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 VPS26BQ4G0F5 336 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 ZNF658BQ4V348 819 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 HSP90AA4PQ58FG1 418 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 SAMD4BQ5PRF9 694 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 OTUD3Q5T2D3 398 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 PDPK2PQ6A1A2 396 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 CCDC137Q6PK04 289 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 ARCQ7LC44 396 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 SLC26A11Q86WA9 606 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 NUDCD3Q8IVD9 361 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 NRMQ8IXM6 262 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 KATNAL2Q8IYT4 538 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 LINC01561Q8N1V8 128 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 ZNRF1Q8ND25 227 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 OR4C5Q8NGB2 326 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 OR1L6Q8NGR2 347 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 OR51Q1Q8NH59 317 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 FAM76AQ8TAV0 307 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 MAGEE2Q8TD90 523 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 TFB1MQ8WVM0 346 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 TSEN15Q8WW01 171 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 UBE2E3Q969T4 207 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 DUX3Q96PT4 197 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 PANX1Q96RD7 426 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 CCT8L2Q96SF2 557 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 NIPSNAP3BQ9BS92 247 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 DEFB126Q9BYW3 111 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 OPN3Q9H1Y3 402 aaPredicted RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 PPA2Q9H2U2 334 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 PNO1Q9NRX1 252 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 FAM120CQ9NX05 1096 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 MED29Q9NX70 200 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 ASF1AQ9Y294 204 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 CHTOPQ9Y3Y2 248 aaKnown RBP3□□□□□ -1.93
LIMA1-208ENST00000551691 NINQ8N4C6 2090 aa3□□□□□ -1.93
LIMA1-208ENST00000551691 TRBV11-1A0A0K0K1C0 115 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 FRG2CA6NGY1 282 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 GOLGA8TH3BQL2 631 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 WWP2O00308 870 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 AIM2O14862 343 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 CLOCKO15516 846 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 CXCL13O43927 109 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 HCN1O60741 890 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 OR2J3O76001 311 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 OR2J2O76002 312 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 IGHG1P01857 330 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 P04436 131 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 ANXA5P08758 320 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 RHOXF2BP0C7M4 288 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 CCL3P10147 92 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 SELEP16581 610 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 GTF2E2P29084 291 aaKnown RBP2.99□□□□□ -1.93
LIMA1-208ENST00000551691 IL12AP29459 219 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 HTR1FP30939 366 aa2.99□□□□□ -1.93
LIMA1-208ENST00000551691 IL2RGP31785 369 aa2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms