RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 GPR157Q5UAW9 335 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 OR5L1Q8NGL2 311 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.4□□□□□ -0.263e-6■■□□□ 13.5
CUX1-214ENST00000550008 KIF26BQ2KJY2 2108 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 MEX3AA1L020 520 aaKnown RBP13.4□□□□□ -0.26
CUX1-214ENST00000550008 OR4C45A6NMZ5 311 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 TMEM229AB2RXF0 380 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 FAM157BP0CG42 384 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 AVPR2P30518 371 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 MGAT2Q10469 447 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 IL11RAQ14626 422 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 SPINK14Q6IE38 97 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 OR4D6Q8NGJ1 314 aa13.4□□□□□ -0.26
CUX1-214ENST00000550008 EXOSC3Q9NQT5 275 aaKnown RBP13.4□□□□□ -0.26
CUX1-214ENST00000550008 OGG1O15527 345 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ZNHIT1O43257 154 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 GLSO94925 669 aaPredicted RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 MGMTP16455 207 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 GALNSP34059 522 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 PPIAP62937 165 aaKnown RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 BTN1A1Q13410 526 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 TIGD3Q6B0B8 471 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 FAM122CQ6P4D5 195 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 WDR74Q6RFH5 385 aaPredicted RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 ZSCAN1Q8NBB4 408 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 PLPP5Q8NEB5 264 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 OR2AK2Q8NG84 335 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 UFSP2Q9NUQ7 469 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 A0A1W2PR80 420 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 OR4E1P0C645 316 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 CCL2P13500 99 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 FHL5Q5TD97 284 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ANKRD16Q6P6B7 361 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 SLC25A26Q70HW3 274 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 GVQW1Q8N7I0 195 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 CTHRC1Q96CG8 243 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ZNF230Q9UIE0 474 aaPredicted RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 TRAPPC2LQ9UL33 140 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 PHF1O43189 567 aaPredicted RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 TSPAN15O95858 294 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 PPP3CBP16298 524 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 DSCR4P56555 118 aaPredicted RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 REEP6Q96HR9 211 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 MTCL1Q9Y4B5 1905 aaKnown RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 B8ZZF3 427 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ADAM11O75078 769 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ZNF780AO75290 641 aaPredicted RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 RGS11O94810 467 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 RECKO95980 971 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ZNF728P0DKX0 622 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 NME2P22392 152 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 GABRA2P47869 451 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ACSM1Q08AH1 577 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 CLN3Q13286 438 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 SLC10A1Q14973 349 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 UBALD1Q8TB05 177 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 SLAMF9Q96A28 289 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 WDR89Q96FK6 387 aaPredicted RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 ST6GAL2Q96JF0 529 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 ZNF768Q9H5H4 540 aaKnown RBP13.39□□□□□ -0.27
CUX1-214ENST00000550008 TIMM10BQ9Y5J6 103 aa13.39□□□□□ -0.27
CUX1-214ENST00000550008 TMEM272A0A1B0GTI8 110 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 GDF9O60383 454 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 NRASP01111 189 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 IFNA5P01569 189 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 TPT1P13693 172 aaKnown RBP13.38□□□□□ -0.27
CUX1-214ENST00000550008 LRRTM1Q86UE6 522 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 GCNT2Q8N0V5 402 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 OR1J2Q8NGS2 313 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 MFRPQ9BY79 579 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 CTAG2O75638 210 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 TIAF1O95411 115 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 ACSM4P0C7M7 580 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 CXCL3P19876 107 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 IL2RGP31785 369 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 ZNF774Q6NX45 483 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 ZNF2Q9BSG1 426 aaPredicted RBP13.38□□□□□ -0.27
CUX1-214ENST00000550008 AKIRIN1Q9H9L7 192 aaPredicted RBP13.38□□□□□ -0.27
CUX1-214ENST00000550008 MRPS18AQ9NVS2 196 aaKnown RBP13.38□□□□□ -0.27
CUX1-214ENST00000550008 PTTG3PQ9NZH4 202 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 RAC2P15153 192 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 PNLIPP16233 465 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 FNDC1Q4ZHG4 1894 aaPredicted RBP13.38□□□□□ -0.27
CUX1-214ENST00000550008 ELFN2Q5R3F8 820 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 FAM74A1Q5RGS3 127 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 TMEM178AQ8NBL3 297 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 AIFM2Q9BRQ8 373 aa13.38□□□□□ -0.27
CUX1-214ENST00000550008 DUSP15Q9H1R2 295 aaPredicted RBP13.38□□□□□ -0.27
CUX1-214ENST00000550008 K7EPK0 472 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 NXPH2O95156 264 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 ADRA2AP08913 450 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 INSM1Q01101 510 aaPredicted RBP13.37□□□□□ -0.27
CUX1-214ENST00000550008 CLINT1Q14677 625 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 NHLRC1Q6VVB1 395 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 RFPL4BQ6ZWI9 263 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 TMUB2Q71RG4 321 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 NLRC3Q7RTR2 1065 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 FAM71E2Q8N5Q1 922 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 ZNF680Q8NEM1 530 aa13.37□□□□□ -0.27
CUX1-214ENST00000550008 OR2V1Q8NHB1 315 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms