RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SLC41A3Q96GZ6 507 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 POM121L2Q96KW2 1035 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 TMEM68Q96MH6 324 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 TRNT1Q96Q11 434 aaKnown RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 OR2V2Q96R30 315 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 NAPGQ99747 312 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 SLC35A5Q9BS91 424 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 KRTAP3-1Q9BYR8 98 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 SIRPDQ9H106 197 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 MTHFD2LQ9H903 347 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 ZDHHC18Q9NUE0 388 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 ARGLU1Q9NWB6 273 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 GLTPQ9NZD2 209 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 SELENONQ9NZV5 590 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 ZNRD1Q9P1U0 126 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF443Q9Y2A4 671 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-204ENST00000549064 FRAS1Q86XX4 4008 aa5.3□□□□□ -1.56
LIMA1-204ENST00000549064 STAB2Q8WWQ8 2551 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 TRAV36DV7A0A075B6V5 113 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 EXOC1LA0A1B0GW35 172 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 A0A1W2PRD5 423 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 A0A1W2PRF3 423 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 A0A1W2PRM7 423 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 BTBD17A6NE02 478 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 RNASEK-C17orf49H0YIS7 233 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 PHYHO14832 338 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 OR2T1O43869 369 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 GLRA3O75311 464 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 BGLAPP02818 100 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 OPN1SWP03999 348 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 CHRNGP07510 517 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 NHLRC4P0CG21 123 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-204ENST00000549064 G6PDP11413 515 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF32P17041 273 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 CHI3L1P36222 383 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-204ENST00000549064 CENPAP49450 140 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 ERFP50548 548 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 EMX1Q04741 257 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-204ENST00000549064 PUDPQ08623 228 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 MELKQ14680 651 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF404Q494X3 552 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 LIN52Q52LA3 116 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 C6orf136Q5SQH8 315 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 METTL11BQ5VVY1 283 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 SLC2A7Q6PXP3 512 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 PNLDC1Q8NA58 520 aaKnown RBP5.29□□□□□ -1.56
LIMA1-204ENST00000549064 FNDC5Q8NAU1 212 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 SPATA4Q8NEY3 305 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 OR4F17Q8NGA8 305 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 MUC7Q8TAX7 377 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 TEX37Q96LM6 180 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 PPP3R2Q96LZ3 170 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 TECTBQ96PL2 329 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 OR4F4Q96R69 305 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 CITED2Q99967 270 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-204ENST00000549064 RAB17Q9H0T7 212 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 EIF3KQ9UBQ5 218 aaKnown RBP5.29□□□□□ -1.56
LIMA1-204ENST00000549064 CTSZQ9UBR2 303 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 IL19Q9UHD0 177 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 CEPT1Q9Y6K0 416 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 A3GALT2U3KPV4 340 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 HYDINQ4G0P3 5121 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 RYR1P21817 5038 aa5.29□□□□□ -1.56
LIMA1-204ENST00000549064 PLPP3O14495 311 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 ETFAP13804 333 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF20P17024 532 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 ANXA7P20073 488 aaKnown RBP5.28□□□□□ -1.56
LIMA1-204ENST00000549064 HTR2AP28223 471 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 PMELP40967 661 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 KIR2DS4P43632 304 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 GDI2P50395 445 aaKnown RBP5.28□□□□□ -1.56
LIMA1-204ENST00000549064 DLX1P56177 255 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 CLDN8P56748 225 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 DNAJB13P59910 316 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 NAA20P61599 178 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 ARF6P62330 175 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 LY6EQ16553 131 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 KLHL22Q53GT1 634 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 SLC35D2Q76EJ3 337 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 NET1Q7Z628 596 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-204ENST00000549064 DPPA2Q7Z7J5 298 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 IGFN1Q86VF2 1251 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 LCA5Q86VQ0 697 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 CALHM3Q86XJ0 350 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 NDUFA11Q86Y39 141 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 PTOV1Q86YD1 416 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 LRRC34Q8IZ02 419 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 FAM185AQ8N0U4 392 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 OR5AS1Q8N127 324 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 PNKDQ8N490 385 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 WFDC9Q8NEX5 89 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 OR10AD1Q8NGE0 317 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 OR2T6Q8NHC8 308 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 RNF183Q96D59 192 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 ZNF503Q96F45 646 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 CENPHQ9H3R5 247 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 AAMDCQ9H7C9 122 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 A4GALTQ9NPC4 353 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 SLC17A7Q9P2U7 560 aa5.28□□□□□ -1.56
LIMA1-204ENST00000549064 SNX5Q9Y5X3 404 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms