RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 OPN4Q9UHM6 478 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF337Q9Y3M9 751 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 PCYT1BQ9Y5K3 369 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-203ENST00000547825 ZDBF2Q9HCK1 2354 aa4.92□□□□□ -1.62
LIMA1-203ENST00000547825 SNRPGP15A8MWD9 76 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 H0YGG7 62 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 P2RX6O15547 441 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SULT1B1O43704 296 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TLX3O43711 291 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR2F2O95006 317 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 NDUFB6O95139 128 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR2C1O95371 312 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SCGB1D1O95968 90 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ALOX5APP20292 161 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TACR3P29371 465 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MRPS34P82930 218 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 GLO1Q04760 184 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ACSM1Q08AH1 577 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PLCXD2Q0VAA5 305 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PMPCAQ10713 525 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 DHRS2Q13268 280 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR2F1Q13607 317 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MEF2DQ14814 521 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF770Q6IQ21 691 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF793Q6ZN11 406 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ANGPTL5Q86XS5 388 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RNF113BQ8IZP6 322 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 C17orf78Q8N4C9 275 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 WFIKKN2Q8TEU8 576 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MITD1Q8WV92 249 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RGP1Q92546 391 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MS4A6EQ96DS6 147 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ALG14Q96F25 216 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SMG1Q96Q15 3661 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 EMC6Q9BV81 110 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SLC17A9Q9BYT1 436 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 LRIT1Q9P2V4 623 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 KCNG2Q9UJ96 466 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR51B4Q9Y5P0 310 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RNF215Q9Y6U7 377 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 FAM230AA0A1W2PPH8 454 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM218A2RU14 115 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 IMPA2O14732 288 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 AKR7A3O95154 331 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 QDPRP09417 244 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 BLVRBP30043 206 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 CLRN1P58418 232 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 EEF1A2Q05639 463 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ELOCQ15369 112 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 NSDHLQ15738 373 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 CST6Q15828 149 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 CD300LDQ6UXZ3 194 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF705AQ6ZN79 300 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 FJX1Q86VR8 437 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 LRP11Q86VZ4 500 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 NRSN1Q8IZ57 195 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PUSL1Q8N0Z8 303 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RFLNBQ8N5W9 214 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 GVQW1Q8N7I0 195 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 STPG3Q8N7X2 389 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 NECAP1Q8NC96 275 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR10AC1Q8NH08 325 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TGM7Q96PF1 710 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 OR5B12Q96R08 314 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 FAM212BQ9NTI7 297 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 C7orf66A4D0T2 115 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 A6NLC8 198 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ZFP92A6NM28 416 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM212A6NML5 194 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 NPIPB8E9PQR5 432 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 RNASEK-C17orf49H0YIS7 233 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 M0R296 226 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 HSPB6O14558 160 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PLPP2O43688 288 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ADAP1O75689 374 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TBX6O95947 436 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 CD14P08571 375 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 CD63P08962 238 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SFTA3P0C7M3 94 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 HOXB2P14652 356 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 NBL1P41271 181 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 DHPSP49366 369 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 DIO1P49895 249 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ZNF136P52737 540 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 POU3F1Q03052 451 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TLE3Q04726 772 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TGIF1Q15583 401 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 HNRNPA1L2Q32P51 320 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 C11orf87Q6NUJ2 197 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 FBXW12Q6X9E4 464 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PGAP1Q75T13 922 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 DND1Q8IYX4 353 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM123Q8N131 208 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 TMEM104Q8NE00 496 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 AKR7LQ8NHP1 331 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 SECTM1Q8WVN6 248 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 PATE1Q8WXA2 126 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MIB2Q96AX9 1013 aa4.91□□□□□ -1.62
LIMA1-203ENST00000547825 ZC3HAV1LQ96H79 300 aaKnown RBP4.91□□□□□ -1.62
LIMA1-203ENST00000547825 MRI1Q9BV20 369 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms