RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 Q8TCH9 128 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 CHAC2Q8WUX2 184 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 ZNRF4Q8WWF5 429 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 WFDC12Q8WWY7 111 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 SLC25A28Q96A46 364 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 PYURFQ96I23 114 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 PLEKHA8Q96JA3 519 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 MAP6Q96JE9 813 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 OR8B2Q96RD0 313 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 ELAC2Q9BQ52 826 aaKnown RBP7.05□□□□□ -1.28
USP28-215ENST00000545608 NUDT16L1Q9BRJ7 211 aaKnown RBP7.05□□□□□ -1.28
USP28-215ENST00000545608 IFT27Q9BW83 186 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 CDADC1Q9BWV3 514 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 GORASP2Q9H8Y8 452 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 KRCC1Q9NPI7 259 aaPredicted RBP7.05□□□□□ -1.28
USP28-215ENST00000545608 UFSP2Q9NUQ7 469 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 MRPL22Q9NWU5 206 aaKnown RBP7.05□□□□□ -1.28
USP28-215ENST00000545608 ADA2Q9NZK5 511 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 CYB5R1Q9UHQ9 305 aa7.05□□□□□ -1.28
USP28-215ENST00000545608 C22orf46C9J442 243 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 HOXA3O43365 443 aaPredicted RBP7.04□□□□□ -1.28
USP28-215ENST00000545608 OR10H3O60404 316 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 HLA-DQA2P01906 255 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 IRF2P14316 349 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 MDKP21741 143 aaPredicted RBP7.04□□□□□ -1.28
USP28-215ENST00000545608 OMGP23515 440 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 PYCR1P32322 319 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 MSX2P35548 267 aaPredicted RBP7.04□□□□□ -1.28
USP28-215ENST00000545608 PSMB10P40306 273 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 RPS27P42677 84 aaKnown RBP7.04□□□□□ -1.28
USP28-215ENST00000545608 GSSP48637 474 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 SMIM11AP58511 58 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 FGF12P61328 243 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 IL13RA1P78552 427 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 ECH1Q13011 328 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 DEFB112Q30KQ8 113 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 SNAI3Q3KNW1 292 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 SLC36A3Q495N2 470 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 SLC35F1Q5T1Q4 408 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 SFRP4Q6FHJ7 346 aaPredicted RBP7.04□□□□□ -1.28
USP28-215ENST00000545608 C16orf87Q6PH81 154 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 BRD3OSQ6XYD6 125 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 DCDC5Q6ZRR9 648 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 PGAP1Q75T13 922 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 TRPM8Q7Z2W7 1104 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 OR10S1Q8NGN2 331 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 OR2AJ1Q8NGZ0 328 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 GNPDA2Q8TDQ7 276 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 ERGIC1Q969X5 290 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 UTP4Q969X6 686 aaKnown RBP7.04□□□□□ -1.28
USP28-215ENST00000545608 CMTM5Q96DZ9 223 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 DDOQ99489 341 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 TSC22D3Q99576 134 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 ATF6BQ99941 703 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 SPAG4Q9NPE6 437 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 PRR13Q9NZ81 148 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 CLN8Q9UBY8 286 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 TMCC3Q9ULS5 477 aa7.04□□□□□ -1.28
USP28-215ENST00000545608 TVP23AA6NH52 213 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 CD300LBA8K4G0 201 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 M0R135 149 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 PHYHO14832 338 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 TNFRSF13BO14836 293 aaPredicted RBP7.03□□□□□ -1.28
USP28-215ENST00000545608 SHOXO15266 292 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 IDH3BO43837 385 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 GMNNO75496 209 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 PSKH1P11801 424 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 CA6P23280 308 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 NOS3P29474 1203 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 PRDX6P30041 224 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 RRM2P31350 389 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 RASSF2P50749 326 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 TPTEP56180 551 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 ZNF92Q03936 586 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.03□□□□□ -1.28
USP28-215ENST00000545608 TSPAN31Q12999 210 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 MALLQ13021 153 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 BLMHQ13867 455 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 OR8G1Q15617 311 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 ZNF362Q5T0B9 420 aaPredicted RBP7.03□□□□□ -1.28
USP28-215ENST00000545608 PGBD2Q6P3X8 592 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 ZNF620Q6ZNG0 422 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 MRPL21Q7Z2W9 205 aaKnown RBP7.03□□□□□ -1.28
USP28-215ENST00000545608 BOLLQ8N9W6 283 aaKnown RBP7.03□□□□□ -1.28
USP28-215ENST00000545608 CYB561A3Q8NBI2 242 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 OR11L1Q8NGX0 322 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 OR2AE1Q8NHA4 323 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 SPRYD4Q8WW59 207 aaPredicted RBP7.03□□□□□ -1.28
USP28-215ENST00000545608 ITFG2Q969R8 447 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 TMIGD2Q96BF3 282 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 ZNF799Q96GE5 643 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 CCDC140Q96MF4 163 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 PRDM13Q9H4Q3 707 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 EGLN3Q9H6Z9 239 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 TNFRSF19Q9NS68 423 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 RNF7Q9UBF6 113 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 CTSZQ9UBR2 303 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 CD300AQ9UGN4 299 aa7.03□□□□□ -1.28
USP28-215ENST00000545608 GGT3PA6NGU5 568 aa7.02□□□□□ -1.29
USP28-215ENST00000545608 LGALS8O00214 317 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms