RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 EMC3Q9P0I2 261 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ASH2LQ9UBL3 628 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 MGAT4CQ9UBM8 478 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF69Q9UC07 566 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 CGGBP1Q9UFW8 167 aaPredicted RBP12.59□□□□□ -0.39
VPS33A-209ENST00000544349 SCP2D1Q9UJQ7 156 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 EMC9Q9Y3B6 208 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 TRAV18A0A075B6X5 111 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 H7C417 338 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 PYCARD-AS1I3L0S3 204 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ICMTO60725 284 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF81P51508 661 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF84P51523 738 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 C2orf76Q3KRA6 126 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 METTL11BQ5VVY1 283 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 TEX261Q6UWH6 196 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 RHOUQ7L0Q8 258 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 NABP1Q96AH0 204 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 GAL3ST1Q99999 423 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF416Q9BWM5 594 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 G6PC2Q9NQR9 355 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 PTTG3PQ9NZH4 202 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 PIPOXQ9P0Z9 390 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 MTFP1Q9UDX5 166 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 U3KQ87 197 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 ZNF407Q9C0G0 2248 aa12.59□□□□□ -0.39
VPS33A-209ENST00000544349 IGKV3D-15A0A087WSY6 115 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 TRGV5A0A0B4J1U4 118 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 TRAV17A0A0B4J275 112 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 TMEM269A0A1B0GVZ9 245 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 LOC107986453A0A1B0GWG9 222 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 RER1O15258 196 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 SYNGR4O95473 234 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 SPINK2P20155 84 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 MMP16P51512 607 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 SCAND1P57086 179 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 PMP22Q01453 160 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 TMEM45BQ96B21 275 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF837Q96EG3 531 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 EIF3KQ9UBQ5 218 aaKnown RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 OR52A1Q9UKL2 312 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 MCTS1Q9ULC4 181 aaKnown RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 DNAJC13O75165 2243 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 LOC100289279A0A1B0GTE1 492 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF878C9JN71 531 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 IGFBP3P17936 291 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 ENDOGQ14249 297 aaKnown RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 KLHL24Q6TFL4 600 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 PLXDC2Q6UX71 529 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF680Q8NEM1 530 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 PCNPQ8WW12 178 aaKnown RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 DPCDQ9BVM2 203 aaPredicted RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 EXO5Q9H790 373 aa12.58□□□□□ -0.4
VPS33A-209ENST00000544349 PNRC2Q9NPJ4 139 aaKnown RBP12.58□□□□□ -0.4
VPS33A-209ENST00000544349 NCOA6Q14686 2063 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-209ENST00000544349 ARPC4-TTLL3A0A0A6YYG9 625 aa12.57□□□□□ -0.4
VPS33A-209ENST00000544349 UBE2MP61081 183 aaKnown RBP12.57□□□□□ -0.4
VPS33A-209ENST00000544349 MRPS34P82930 218 aaKnown RBP12.57□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF626Q68DY1 528 aa12.57□□□□□ -0.4
VPS33A-209ENST00000544349 GPR137CQ8N3F9 429 aa12.57□□□□□ -0.4
VPS33A-209ENST00000544349 THRSPQ92748 146 aa12.57□□□□□ -0.4
VPS33A-209ENST00000544349 DVL3Q92997 716 aaPredicted RBP12.57□□□□□ -0.4
VPS33A-209ENST00000544349 CRLF2Q9HC73 371 aa12.57□□□□□ -0.4
VPS33A-209ENST00000544349 FAM206AQ9NX38 181 aa12.57□□□□□ -0.4
VPS33A-209ENST00000544349 MYEF2Q9P2K5 600 aaKnown RBP12.57□□□□□ -0.4
VPS33A-209ENST00000544349 SPRR3Q9UBC9 169 aa12.57□□□□□ -0.4
VPS33A-209ENST00000544349 SLC22A5O76082 557 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 ISG15P05161 165 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 CPN1P15169 458 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 FSTP19883 344 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 MECP2P51608 486 aaKnown RBP12.56□□□□□ -0.4
VPS33A-209ENST00000544349 SPOCK1Q08629 439 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 C3AR1Q16581 482 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 C2orf68Q2NKX9 166 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 ZNF704Q6ZNC4 412 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-209ENST00000544349 CDH24Q86UP0 819 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 LRRC18Q8N456 261 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 FTMTQ8N4E7 242 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 FNDC9Q8TBE3 224 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 CPT1CQ8TCG5 803 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 WDYHV1Q96HA8 205 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 SORCS2Q96PQ0 1159 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 GINS4Q9BRT9 223 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 PRRG4Q9BZD6 226 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 ATG5Q9H1Y0 275 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 NOSIPQ9Y314 301 aaKnown RBP12.56□□□□□ -0.4
VPS33A-209ENST00000544349 TTLL8A6PVC2 850 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 LEUTXA8MZ59 168 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 RBBP9O75884 186 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 HSD11B1P28845 292 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 TAF13Q15543 124 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 GLYATL3Q5SZD4 288 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 RIPPLY2Q5TAB7 128 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 FAM27BQ5VT28 67 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 OR10K2Q6IF99 312 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 GJC3Q8NFK1 279 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 OR13C3Q8NGS6 347 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 C15orf40Q8WUR7 153 aa12.56□□□□□ -0.4
VPS33A-209ENST00000544349 ALKBH3Q96Q83 286 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-209ENST00000544349 SCNM1Q9BWG6 230 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms