RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 VAPAQ9P0L0 249 aa7.42□□□□□ -1.22
USP28-205ENST00000537706 A0A1B0GW55 424 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 OOEPA6NGQ2 149 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 TIPRLO75663 272 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 GLCEO94923 617 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 HIST1H2ABP04908 130 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 DUX4L2P0CJ85 424 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 DUX4L3P0CJ86 424 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 DUX4L5P0CJ88 424 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 DUX4L6P0CJ89 424 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 DUX4L7P0CJ90 424 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 COX5BP10606 129 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 HOXB9P17482 250 aaPredicted RBP7.41□□□□□ -1.22
USP28-205ENST00000537706 PMELP40967 661 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 SELPLGQ14242 412 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 CYP51A1Q16850 503 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 C9orf66Q5T8R8 295 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 ULK3Q6PHR2 472 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 DUX4L9Q6RFH8 374 aaPredicted RBP7.41□□□□□ -1.22
USP28-205ENST00000537706 HIST3H2AQ7L7L0 130 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 SBSPONQ8IVN8 264 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 MSRB3Q8IXL7 192 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 RIMKLAQ8IXN7 391 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 PNKDQ8N490 385 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 LY6G5BQ8NDX9 201 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 NOXO1Q8NFA2 376 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 HIST1H2ACQ93077 130 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 NSMCE2Q96MF7 247 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 OR52E6Q96RD3 313 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 METTL8Q9H825 291 aaKnown RBP7.41□□□□□ -1.22
USP28-205ENST00000537706 DUX4Q9UBX2 424 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 AURKCQ9UQB9 309 aa7.41□□□□□ -1.22
USP28-205ENST00000537706 FAM220BPB1ANY3 271 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 J3QW42 95 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 M0R1W7 72 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 GYPAP02724 150 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 CST2P09228 141 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 MYF6P23409 242 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 FPR3P25089 353 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 FASP25445 335 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 S100A3P33764 101 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 MYCNOSP40205 109 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 RAD23AP54725 363 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 LGALS4P56470 323 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 ECH1Q13011 328 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 C10orf128Q5T292 105 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 ANKRD46Q86W74 232 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 CLIP4Q8N3C7 705 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 OR2T12Q8NG77 320 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 ITCHQ96J02 903 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 MYCBPQ99417 103 aaPredicted RBP7.4□□□□□ -1.22
USP28-205ENST00000537706 PAIP1Q9H074 479 aaKnown RBP7.4□□□□□ -1.22
USP28-205ENST00000537706 UFSP2Q9NUQ7 469 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 SLC25A37Q9NYZ2 338 aa7.4□□□□□ -1.22
USP28-205ENST00000537706 IGKV1D-42A0A075B6H8 117 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 A0A1B0GWA3 101 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 A0A1W2PRG6 482 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 DPPA5A6NC42 116 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 LY86O95711 162 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 NCK1P16333 377 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 HOXB6P17509 224 aaKnown RBP7.4□□□□□ -1.23
USP28-205ENST00000537706 VEGFCP49767 419 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 IL5RAQ01344 420 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 ATP6AP1Q15904 470 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 FAM27BQ5VT28 67 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 OR2T2Q6IF00 324 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 COLCA1Q6ZS62 124 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 SLC36A1Q7Z2H8 476 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 AMIGO2Q86SJ2 522 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 SLC30A8Q8IWU4 369 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 OR8J2Q8NGG1 315 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 OR5D13Q8NGL4 314 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 RPS4Y2Q8TD47 263 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 RASD2Q96D21 266 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 CENPNQ96H22 339 aaPredicted RBP7.4□□□□□ -1.23
USP28-205ENST00000537706 ZNF347Q96SE7 839 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 CIB1Q99828 191 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 WACQ9BTA9 647 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 C9orf16Q9BUW7 83 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 POFUT1Q9H488 388 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 TMEM27Q9HBJ8 222 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 STARD10Q9Y365 291 aa7.4□□□□□ -1.23
USP28-205ENST00000537706 C12orf71A8MTZ7 269 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 NDUFB3O43676 98 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 GMNNO75496 209 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 KRT75O95678 551 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 SLC6A1P30531 599 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 CDAP32320 146 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 CD200P41217 278 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 THBS3P49746 956 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 HOXC5Q00444 222 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 PRB3Q04118 309 aaPredicted RBP7.39□□□□□ -1.23
USP28-205ENST00000537706 GLYATQ6IB77 296 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 C1orf94Q6P1W5 598 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 ZBTB49Q6ZSB9 765 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 MICU2Q8IYU8 434 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 LSMEM1Q8N8F7 131 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 AJUBAQ96IF1 538 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 MOGAT1Q96PD6 335 aa7.39□□□□□ -1.23
USP28-205ENST00000537706 IKZF5Q9H5V7 419 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms