RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ESRRGP62508 458 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 SRSF2Q01130 221 aaKnown RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 APOFQ13790 326 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 FAM201AQ5SY85 155 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 PRAMEF6Q5VXH4 476 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 KDM4DQ6B0I6 523 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 FAM57BQ71RH2 274 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 ASRGL1Q7L266 308 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 ZNF454Q8N9F8 522 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 OR4M2Q8NGB6 313 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 OR56B2PQ8NGI1 322 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 THEM6Q8WUY1 208 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 DVL3Q92997 716 aaPredicted RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 SGK3Q96BR1 496 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 ADAT1Q9BUB4 502 aaKnown RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 TMPRSS13Q9BYE2 586 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 SLC22A4Q9H015 551 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 GABARAPL1Q9H0R8 117 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 OPA3Q9H6K4 179 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 TMEM165Q9HC07 324 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 KRT84Q9NSB2 600 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 MRPL15Q9P015 296 aaKnown RBP12.42□□□□□ -0.42
USP28-204ENST00000537642 ZNF319Q9P2F9 582 aa12.42□□□□□ -0.42
USP28-204ENST00000537642 CEACAM18A8MTB9 384 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 PRKYO43930 277 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 GMDSO60547 372 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 FAM20BO75063 409 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 FOXH1O75593 365 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 CIB2O75838 187 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 APOC1P02654 83 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 FCGR1AP12314 374 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 EPHA2P29317 976 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 HCCSP53701 268 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 FAM3AP98173 230 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 MPPED2Q15777 294 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 TIGD6Q17RP2 521 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 DCAF12L2Q5VW00 463 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 SLC16A9Q7RTY1 509 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 ZDHHC13Q8IUH4 622 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 PHC2Q8IXK0 858 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 Q8TCH9 128 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 TMEM158Q8WZ71 300 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 ERGIC1Q969X5 290 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 REEP6Q96HR9 211 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 TEAD3Q99594 435 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 METTL17Q9H7H0 456 aaPredicted RBP12.41□□□□□ -0.42
USP28-204ENST00000537642 SP140LQ9H930 580 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 UFSP2Q9NUQ7 469 aa12.41□□□□□ -0.42
USP28-204ENST00000537642 NOP16Q9Y3C1 178 aaKnown RBP12.41□□□□□ -0.42
USP28-204ENST00000537642 LOC105371242A0A075B767 164 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 hCG_38984A0A1B0GV85 526 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 LRRC30A6NM36 301 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 ZAR1LA6NP61 321 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 J3QLI3 93 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 M0R129 80 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 PTBP3O95758 552 aaKnown RBP12.4□□□□□ -0.42
USP28-204ENST00000537642 ALOX5APP20292 161 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 KRTAP24-1Q3LI83 254 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 SLX4IPQ5VYV7 408 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 LRRN1Q6UXK5 716 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.4□□□□□ -0.42
USP28-204ENST00000537642 C1orf87Q8N0U7 546 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 MUC20Q8N307 709 aaPredicted RBP12.4□□□□□ -0.42
USP28-204ENST00000537642 OR52H1Q8NGJ2 320 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 PGAM5Q96HS1 289 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 SEMA6AQ9H2E6 1030 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 BRD7Q9NPI1 651 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 METRNQ9UJH8 293 aa12.4□□□□□ -0.42
USP28-204ENST00000537642 POLR3KQ9Y2Y1 108 aaPredicted RBP12.4□□□□□ -0.42
USP28-204ENST00000537642 PPIAL4EA0A075B759 164 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 PPIAL4CA0A0B4J2A2 164 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 A8MXK9 166 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 PPIAL4DF5H284 164 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 TRAPPC2LH3BP13 241 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 FSTL3O95633 263 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 MRPL3P09001 348 aaKnown RBP12.39□□□□□ -0.43
USP28-204ENST00000537642 WNT2P09544 360 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 PPIAL4FP0DN26 164 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 IRF2P14316 349 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 GATA3P23771 443 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 DDOSTP39656 456 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 EFNB1P98172 346 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 HOXA4Q00056 320 aaPredicted RBP12.39□□□□□ -0.43
USP28-204ENST00000537642 ZNF404Q494X3 552 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 LCN1P1Q5VSP4 162 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 C12orf73Q69YU5 71 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 BCDIN3DQ7Z5W3 292 aaKnown RBP12.39□□□□□ -0.43
USP28-204ENST00000537642 RFLNBQ8N5W9 214 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 OR11L1Q8NGX0 322 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 SPATA3Q8NHX4 192 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 TMEM246Q9BRR3 403 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 YIPF3Q9GZM5 350 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 OR10A2Q9H208 303 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 MMP26Q9NRE1 261 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 OPN4Q9UHM6 478 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 LAMP5Q9UJQ1 280 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 PPIAL4AQ9Y536 164 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 LRP12Q9Y561 859 aa12.39□□□□□ -0.43
USP28-204ENST00000537642 ANKRD30BLA7E2S9 258 aa12.38□□□□□ -0.43
USP28-204ENST00000537642 PRR32B1ATL7 298 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms