RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 OXA1LQ15070 435 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 SOWAHCQ53LP3 525 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-209ENST00000537178 ZNF385BQ569K4 471 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 PTCRAQ6ISU1 281 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-209ENST00000537178 ZNF574Q6ZN55 896 aaPredicted RBP9.66□□□□□ -0.86
CLIP1-209ENST00000537178 PSENENQ9NZ42 101 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 A0A1B0GUH1 482 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 LOC102723971A0A1B0GUV8 181 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 ZNF320A2RRD8 509 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 IFITM5A6NNB3 132 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 SLC25A6P12236 298 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 S100A4P26447 101 aaKnown RBP9.66□□□□□ -0.86
CLIP1-209ENST00000537178 OR2M7Q8NG81 312 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 OR2A1Q8NGT9 310 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 UCK1Q9HA47 277 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 ZNF346Q9UL40 294 aaKnown RBP9.66□□□□□ -0.86
CLIP1-209ENST00000537178 KNTC1P50748 2209 aa9.66□□□□□ -0.86
CLIP1-209ENST00000537178 CACNA1CQ13936 2221 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 FIGNL2A6NMB9 653 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 KLKB1P03952 638 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 DUSP8Q13202 625 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 CCSMST1Q4G0I0 132 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 BATF2Q8N1L9 274 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 GPR119Q8TDV5 335 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 PTDSS2Q9BVG9 487 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 C1QTNF6Q9BXI9 259 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 FGF22Q9HCT0 170 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 TIMM9Q9Y5J7 89 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 IGHV3-20A0A0C4DH32 117 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 COX7A2P2O60397 106 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 SNRPNP63162 240 aaKnown RBP9.65□□□□□ -0.86
CLIP1-209ENST00000537178 DLEU7Q6UYE1 221 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 LILRA3Q8N6C8 439 aaPredicted RBP9.65□□□□□ -0.86
CLIP1-209ENST00000537178 NUDCD2Q8WVJ2 157 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 RTN4IP1Q8WWV3 396 aaPredicted RBP9.65□□□□□ -0.86
CLIP1-209ENST00000537178 DPF1Q92782 380 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 NDRG3Q9UGV2 375 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 A0A0B4J203 849 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 TUBAL3A6NHL2 446 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 CBY3A6NI87 242 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 DSCR3O14972 297 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 B4GALT3O60512 393 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 IL5P05113 134 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 MGMTP16455 207 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 SSBP1Q04837 148 aaKnown RBP9.65□□□□□ -0.86
CLIP1-209ENST00000537178 OTUD1Q5VV17 481 aaPredicted RBP9.65□□□□□ -0.86
CLIP1-209ENST00000537178 GALNT16Q8N428 558 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 SIRT6Q8N6T7 355 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 KLHDC9Q8NEP7 349 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 SMIM19Q96E16 107 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 OXGR1Q96P68 337 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 UBE2ZQ9H832 354 aaPredicted RBP9.65□□□□□ -0.86
CLIP1-209ENST00000537178 C12orf10Q9HB07 376 aa9.65□□□□□ -0.86
CLIP1-209ENST00000537178 NCBP2LA6PVI3 153 aaKnown RBP9.65□□□□□ -0.87
CLIP1-209ENST00000537178 ST8SIA5O15466 376 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 GPX5O75715 221 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 OR4E1P0C645 316 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 IAPPP10997 89 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 EXOSC2Q13868 293 aaKnown RBP9.65□□□□□ -0.87
CLIP1-209ENST00000537178 ACSM5Q6NUN0 579 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 FA2HQ7L5A8 372 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 OR1J1Q8NGS3 322 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 SIGLEC11Q96RL6 698 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 CCL26Q9Y258 94 aa9.65□□□□□ -0.87
CLIP1-209ENST00000537178 DNAH12Q6ZR08 3092 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 IGLV3-10A0A075B6K4 115 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 C5orf49A4QMS7 147 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 ZAR1LA6NP61 321 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 HMGN4O00479 90 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 GPR37O15354 613 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 B3GALNT1O75752 331 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 B3GALT4O96024 378 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 EVX1P49640 407 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 PRR27Q6MZM9 219 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 ARHGEF39Q8N4T4 335 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 BCORP1Q8N888 145 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 MORN4Q8NDC4 146 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 ZNF385DQ9H6B1 395 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 R4GMQ9 66 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 A0A1W2PR48 441 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 CLEC18AA5D8T8 446 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 LRRC3CA6NJW4 275 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 SCGB1C2P0DMR2 95 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 HNF1AP20823 631 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 USF1P22415 310 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-209ENST00000537178 TPPP2P59282 170 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 KRTDAPP60985 99 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 RPL18Q07020 188 aaKnown RBP9.64□□□□□ -0.87
CLIP1-209ENST00000537178 CDK5R1Q15078 307 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 SHHQ15465 462 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 AFMIDQ63HM1 303 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 ASTLQ6HA08 431 aaPredicted RBP9.64□□□□□ -0.87
CLIP1-209ENST00000537178 CORO6Q6QEF8 472 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 ZDHHC23Q8IYP9 409 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 EXD3Q8N9H8 876 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 CLEC18CQ8NCF0 446 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 GABARAPL3Q9BY60 117 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 DUSP21Q9H596 190 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 OR2T2Q6IF00 324 aa9.64□□□□□ -0.87
CLIP1-209ENST00000537178 OR10AD1Q8NGE0 317 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms