RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 CEACAM6P40199 344 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ETV5P41161 510 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ACTR1BP42025 376 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 MRPL19P49406 292 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 ERFP50548 548 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 P2RY4P51582 365 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 RIDAP52758 137 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 STC1P52823 247 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CLDN6P56747 220 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 DEFA1P59665 94 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 DEFA3P59666 94 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 SPCS3P61009 180 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ABCE1P61221 599 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 TSPAN5P62079 268 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 HERVK_113P63132 956 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ERVK-8P63133 956 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 SLC35A2P78381 396 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 BCL2L1Q07817 233 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TGM3Q08188 693 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 FUT7Q11130 342 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ILKQ13418 452 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 IL18R1Q13478 541 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ZNF235Q14590 738 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ZNF146Q15072 292 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 NEDD8Q15843 81 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ZNF404Q494X3 552 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ZNF542PQ5EBM4 170 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TFDP3Q5H9I0 405 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 MARC1Q5VT66 337 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 STEAP4Q687X5 459 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 WASH2PQ6VEQ5 465 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 NPSR1Q6W5P4 371 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ZNF841Q6ZN19 808 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 GOLGA7Q7Z5G4 137 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 HSD11B1LQ7Z5J1 315 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 LHFPL3Q86UP9 236 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 PARGQ86W56 976 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 RNF130Q86XS8 419 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ZGRF1Q86YA3 2104 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 RAB43Q86YS6 212 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 NUDCD3Q8IVD9 361 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CTAGE3PQ8IX95 158 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 RIMKLAQ8IXN7 391 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 FAM9CQ8IZT9 166 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CBR4Q8N4T8 237 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 EID2Q8N6I1 236 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 LINC00612Q8N6U2 182 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 YIPF7Q8N8F6 280 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 FAM83FQ8NEG4 500 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 DUSP18Q8NEJ0 188 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 BPIFCQ8NFQ6 507 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 OR9Q2Q8NGE9 314 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 OR5M9Q8NGP3 310 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 OR4C6Q8NH72 309 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 NDNFQ8TB73 568 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CXorf40AQ8TE69 158 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 TSEN15Q8WW01 171 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 SPRYD4Q8WW59 207 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 OR1E3Q8WZA6 343 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 OSTF1Q92882 214 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 RBPMSQ93062 196 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 TOMM40LQ969M1 308 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 MCHR2Q969V1 340 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TMEM45BQ96B21 275 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 IMP4Q96G21 291 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 MRPL48Q96GC5 212 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 AURKBQ96GD4 344 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 COX14Q96I36 57 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 HYLS1Q96M11 299 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 C12orf66Q96MD2 445 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 VSTM2LQ96N03 204 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 QKIQ96PU8 341 aaKnown RBP eCLIP2.73□□□□□ -1.973e-10■■□□□ 13.7
USP48-215ENST00000534705 S1PR3Q99500 378 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 APOL4Q9BPW4 351 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 TTYH2Q9BSA4 534 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CHCHD5Q9BSY4 110 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ALKBH7Q9BT30 221 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 NDUFAF3Q9BU61 184 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 APOOQ9BUR5 198 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 RBM24Q9BX46 236 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 ERVK-6Q9BXR3 956 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 UCK2Q9BZX2 261 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 ALX4Q9H161 411 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 DPEP2Q9H4A9 486 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 AUNIPQ9H7T9 357 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 DYRK4Q9NR20 520 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 CHRAC1Q9NRG0 131 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 PHPT1Q9NRX4 125 aaPredicted RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 DDX28Q9NUL7 540 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 RBM22Q9NW64 420 aaKnown RBP eCLIP2.73□□□□□ -1.972e-10■■■□□ 17
USP48-215ENST00000534705 BABAM2Q9NXR7 383 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 KLHL28Q9NXS3 571 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 SLC2A8Q9NY64 477 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 P2RX2Q9UBL9 471 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 KLK11Q9UBX7 282 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 BTNL2Q9UIR0 455 aa2.73□□□□□ -1.97
USP48-215ENST00000534705 PURGQ9UJV8 347 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 MRTO4Q9UKD2 239 aaKnown RBP2.73□□□□□ -1.97
USP48-215ENST00000534705 RPH3ALQ9UNE2 315 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms