RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 HLA-DPB1P04440 258 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 OR2T7P0C7T2 308 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 TNFRSF1AP19438 455 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 PSMA6P60900 246 aaKnown RBP16.8■□□□□ 0.28
CPSF1-209ENST00000532725 ENTHD1Q8IYW4 607 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 OR10AD1Q8NGE0 317 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 OR2T27Q8NH04 317 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 PGAM5Q96HS1 289 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 APOL4Q9BPW4 351 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 FAM206AQ9NX38 181 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 SMPD3Q9NY59 655 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-209ENST00000532725 MRPL15Q9P015 296 aaKnown RBP16.8■□□□□ 0.28
CPSF1-209ENST00000532725 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.8■□□□□ 0.28
CPSF1-209ENST00000532725 ZFHX3Q15911 3703 aa16.8■□□□□ 0.28
CPSF1-209ENST00000532725 TMEM269A0A1B0GVZ9 245 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 ERICH4A6NGS2 130 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 ZNF670-ZNF695F2Z2N8 137 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 F5H5P2 479 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 MAGEB4O15481 346 aaPredicted RBP16.79■□□□□ 0.28
CPSF1-209ENST00000532725 APOL3O95236 402 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 IGHV4-31P0DP07 118 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 CA6P23280 308 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 DDOSTP39656 456 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 CHN2P52757 468 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 EGR3Q06889 387 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 HNRNPA0Q13151 305 aaKnown RBP16.79■□□□□ 0.28
CPSF1-209ENST00000532725 TIGD6Q17RP2 521 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 SSX6Q7RTT6 188 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 PACRGLQ8N7B6 248 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 OR56B2PQ8NGI1 322 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 MEGF10Q96KG7 1140 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 TTTY10Q9BZA0 68 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 SLC22A4Q9H015 551 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 RGCCQ9H4X1 137 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 GCM1Q9NP62 436 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 C8orf4Q9NR00 106 aa16.79■□□□□ 0.28
CPSF1-209ENST00000532725 MRM2Q9UI43 246 aaKnown RBP16.79■□□□□ 0.28
CPSF1-209ENST00000532725 FN1P02751 2386 aaKnown RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 hCG_38984A0A1B0GV85 526 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 A0A1W2PQL4 384 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 CASQ2O14958 399 aaPredicted RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 MPZL2O60487 215 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 SRSF10O75494 262 aaKnown RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 CFL1P23528 166 aaKnown RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 PEX2P28328 305 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 IL2RGP31785 369 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 ATP6V1E1P36543 226 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 RBMXP38159 391 aaKnown RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 MTNR1AP48039 350 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 SRP9P49458 86 aaKnown RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 GSK3AP49840 483 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 MMP16P51512 607 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 RIDAP52758 137 aaKnown RBP16.78■□□□□ 0.28
CPSF1-209ENST00000532725 MAB21L1Q13394 359 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 ZNF684Q5T5D7 378 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 CYB5R2Q6BCY4 276 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 OR8B12Q8NGG6 310 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 HPS1Q92902 700 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 LYZL4Q96KX0 146 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 SOX7Q9BT81 388 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 DCLRE1BQ9H816 532 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 TMEM106BQ9NUM4 274 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 DCAF16Q9NXF7 216 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 IKZF2Q9UKS7 526 aa16.78■□□□□ 0.28
CPSF1-209ENST00000532725 NF1P21359 2839 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 CLDN25C9JDP6 229 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 J3QRE1 110 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 GMDSO60547 372 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 PNPP00491 289 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 GZMKP49863 264 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 MVKQ03426 396 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 SLC3A1Q07837 685 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 OGFRL1Q5TC84 451 aaPredicted RBP16.77■□□□□ 0.28
CPSF1-209ENST00000532725 CELF2-AS1Q8N7Q2 184 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 PPP1R14AQ96A00 147 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 RNFT2Q96EX2 444 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 C1orf159Q96HA4 380 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 TBX5Q99593 518 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 PPP1R3CQ9UQK1 317 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 WIPI2Q9Y4P8 454 aa16.77■□□□□ 0.28
CPSF1-209ENST00000532725 DYSFO75923 2080 aa16.77■□□□□ 0.27
CPSF1-209ENST00000532725 SONP18583 2426 aaKnown RBP16.77■□□□□ 0.27
CPSF1-209ENST00000532725 A0A0U1RQV5 110 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 CD200P41217 278 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 GATA4P43694 442 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 OR8G1Q15617 311 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 OR8B8Q15620 311 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 GFOD2Q3B7J2 385 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 AVPI1Q5T686 147 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF555Q8NEP9 628 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 OR10H4Q8NGA5 316 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 CLDND2Q8NHS1 167 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 RAB1CQ92928 201 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 MSI2Q96DH6 328 aaKnown RBP16.76■□□□□ 0.27
CPSF1-209ENST00000532725 SIGLEC11Q96RL6 698 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 PBOV1Q9GZY1 135 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 NKX1-2Q9UD57 310 aaPredicted RBP16.76■□□□□ 0.27
CPSF1-209ENST00000532725 ZNF391Q9UJN7 358 aa16.76■□□□□ 0.27
CPSF1-209ENST00000532725 EXOGQ9Y2C4 368 aaKnown RBP16.76■□□□□ 0.27
CPSF1-209ENST00000532725 IGHV3-64DA0A0J9YX35 117 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms