RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 LPAR5Q9H1C0 372 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 SLC25A32Q9H2D1 315 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 DUX4Q9UBX2 424 aa18.78■□□□□ 0.6
VPS28-205ENST00000526204 TMEM265A0A087WTH1 108 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 A8MXK9 166 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 SPDEFO95238 335 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 TMPPEQ6ZT21 453 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 TNFSF18Q9UNG2 199 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 LOC100509620A0A075B734 347 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 POM121CA8CG34 1229 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 SSX5O60225 188 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 DCNP07585 359 aaKnown RBP18.77■□□□□ 0.6
VPS28-205ENST00000526204 CTSSP25774 331 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 NUP62P37198 522 aaPredicted RBP18.77■□□□□ 0.6
VPS28-205ENST00000526204 GUCA1AP43080 201 aaPredicted RBP18.77■□□□□ 0.6
VPS28-205ENST00000526204 LSM6P62312 80 aaKnown RBP18.77■□□□□ 0.6
VPS28-205ENST00000526204 SLC22A6Q4U2R8 563 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 ZNF283Q8N7M2 679 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 HLA-CQ95604 372 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 PPA2Q9H2U2 334 aa18.77■□□□□ 0.6
VPS28-205ENST00000526204 LOC102723996A0A087X1L8 192 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 SLC2A1P11166 492 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 TAS2R31P59538 309 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 EIF3IQ13347 325 aaKnown RBP18.76■□□□□ 0.59
VPS28-205ENST00000526204 IL11RAQ14626 422 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 ACTBL2Q562R1 376 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 OVCH2Q7RTZ1 564 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 HSD17B13Q7Z5P4 300 aaPredicted RBP18.76■□□□□ 0.59
VPS28-205ENST00000526204 GTPBP8Q8N3Z3 284 aaPredicted RBP18.76■□□□□ 0.59
VPS28-205ENST00000526204 EIF4E3Q8N5X7 224 aaKnown RBP18.76■□□□□ 0.59
VPS28-205ENST00000526204 GALNT11Q8NCW6 608 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 OR4K15Q8NH41 348 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 RAB3CQ96E17 227 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 FAM71F1Q96KD3 344 aaPredicted RBP18.76■□□□□ 0.59
VPS28-205ENST00000526204 ANAPC10Q9UM13 185 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 KANTRA0A1W2PQU2 76 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 CDC14BO60729 498 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 RAMP1O60894 148 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 DUS4LO95620 317 aaKnown RBP18.76■□□□□ 0.59
VPS28-205ENST00000526204 HCKP08631 526 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 FGF2P09038 288 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 FGF5P12034 268 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 ZNF17P17021 662 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 NAT1P18440 290 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 PCOLCEQ15113 449 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 NAA40Q86UY6 237 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 OR1S1Q8NH92 325 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 ST8SIA2Q92186 375 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 TMEM41AQ96HV5 264 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 C1orf147Q96MC9 270 aaPredicted RBP18.76■□□□□ 0.59
VPS28-205ENST00000526204 NICN1Q9BSH3 213 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 TMEM59Q9BXS4 323 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 ZNF319Q9P2F9 582 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 SIT1Q9Y3P8 196 aa18.76■□□□□ 0.59
VPS28-205ENST00000526204 OR2AT4A6NND4 320 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 EFSO43281 561 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 MPIG6BO95866 241 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 RLN2P04090 185 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 HIST1H1DP16402 221 aaKnown RBP18.75■□□□□ 0.59
VPS28-205ENST00000526204 CLDN17P56750 224 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 PNLIPRP3Q17RR3 467 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 PRAMEF20Q5VT98 475 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 OPN5Q6U736 354 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 FAM57BQ71RH2 274 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 OR56B1Q8NGI3 324 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 PPP1R1CQ8WVI7 109 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 SPACA5Q96QH8 159 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 OCIAD1Q9NX40 245 aa18.75■□□□□ 0.59
VPS28-205ENST00000526204 LIPCP11150 499 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 OR3A4PP47883 348 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 HOGA1Q86XE5 327 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 TMEM104Q8NE00 496 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 ST8SIA4Q92187 359 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 LINC00052Q96N35 136 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 URM1Q9BTM9 101 aaKnown RBP18.74■□□□□ 0.59
VPS28-205ENST00000526204 C1QTNF6Q9BXI9 259 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 CCSO14618 274 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 HPP00738 406 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 PMP2P02689 132 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 H3F3AP84243 136 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 HLA-BQ31612 363 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 VAX1Q5SQQ9 334 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 JMJD6Q6NYC1 403 aaPredicted RBP18.74■□□□□ 0.59
VPS28-205ENST00000526204 ACOT7LQ6ZUV0 252 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 SLC38A6Q8IZM9 456 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 ARRDC1Q8N5I2 433 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 TERB2Q8NHR7 220 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 FBXW5Q969U6 566 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 SEC22AQ96IW7 307 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 GPER1Q99527 375 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 SOX7Q9BT81 388 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 AKIRIN1Q9H9L7 192 aaPredicted RBP18.74■□□□□ 0.59
VPS28-205ENST00000526204 GHRLQ9UBU3 117 aa18.74■□□□□ 0.59
VPS28-205ENST00000526204 A0A0A6YYD4 124 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 BCL2L11O43521 198 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 EIF1BO60739 113 aaKnown RBP18.73■□□□□ 0.59
VPS28-205ENST00000526204 MSR1P21757 451 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 VAMP1P23763 118 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 CBX5P45973 191 aa18.73■□□□□ 0.59
VPS28-205ENST00000526204 ECH1Q13011 328 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms