RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 VNN3Q9NY84 501 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 VAPAQ9P0L0 249 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 LSM7Q9UK45 103 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 PAIP2BQ9ULR5 123 aaKnown RBP3.87□□□□□ -1.79
CD44-220ENST00000525688 GMPPBQ9Y5P6 360 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 IGSF9BQ9UPX0 1349 aa3.87□□□□□ -1.79
CD44-220ENST00000525688 VCANP13611 3396 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 A0A0A6YYD4 124 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 IGHV2-70DA0A0C4DH43 119 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 GLYATL1P3A0A0U1RQE8 302 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 FAM231BA6NCW3 169 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 FTCDNL1E5RQL4 147 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 PLPP1O14494 284 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 HSD17B6O14756 317 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 PPIHO43447 177 aaKnown RBP3.86□□□□□ -1.79
CD44-220ENST00000525688 TGOLN2O43493 480 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 MPZL1O95297 269 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 DHFRP00374 187 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 PRKACGP22612 351 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ATP5A1P25705 553 aaKnown RBP3.86□□□□□ -1.79
CD44-220ENST00000525688 CRYBA2P53672 197 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 AESQ08117 197 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 SF3A2Q15428 464 aaKnown RBP3.86□□□□□ -1.79
CD44-220ENST00000525688 TAL2Q16559 108 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 POU2AF1Q16633 256 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 DUSP7Q16829 419 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 RFX4Q33E94 735 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 BSXQ3C1V8 233 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 CCDC153Q494R4 210 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ZFP69Q49AA0 526 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 PDZD11Q5EBL8 140 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 LPCAT4Q643R3 524 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 DUPD1Q68J44 220 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 NIPAL1Q6NVV3 410 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 LRRN1Q6UXK5 716 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ACOT7LQ6ZUV0 252 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 CMC1Q7Z7K0 106 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 NT5DC3Q86UY8 548 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 SLC47A2Q86VL8 602 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 PRSS58Q8IYP2 241 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ABHD12Q8N2K0 398 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ATP6V1C2Q8NEY4 427 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 OR6K6Q8NGW6 343 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 OR6F1Q8NGZ6 308 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 OR5K2Q8NHB8 316 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ZNF519Q8TB69 540 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 APH1BQ8WW43 257 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 STMN2Q93045 179 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 C11orf52Q96A22 123 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 TADA1Q96BN2 335 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 PPWD1Q96BP3 646 aaKnown RBP3.86□□□□□ -1.79
CD44-220ENST00000525688 FLYWCH2Q96CP2 140 aaKnown RBP3.86□□□□□ -1.79
CD44-220ENST00000525688 STACQ99469 402 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 RNF2Q99496 336 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 TEAD3Q99594 435 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ZNF670Q9BS34 389 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 BARHL1Q9BZE3 327 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ASB7Q9H672 318 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 TMBIM4Q9HC24 238 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 UBE2TQ9NPD8 197 aaPredicted RBP3.86□□□□□ -1.79
CD44-220ENST00000525688 ACP6Q9NPH0 428 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 ISYNA1Q9NPH2 558 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 B3GAT2Q9NPZ5 323 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 FGFR1OP2Q9NVK5 253 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 CACNG5Q9UF02 275 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 USH1CQ9Y6N9 552 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 COL1A2P08123 1366 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 TANC1Q9C0D5 1861 aa3.86□□□□□ -1.79
CD44-220ENST00000525688 TET1Q8NFU7 2136 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 TCRBV9S1A1TA0A576 114 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 ANKRD20A5PA0PJZ0 165 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 TSPAN11A1L157 253 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 C2orf74A8MZ97 194 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 G3V2L1 256 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 INPP4BO15327 924 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 FGF16O43320 207 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 HPGDSO60760 199 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 MPDU1O75352 247 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 SRP72O76094 671 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 OXSR1O95747 527 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 SERPINA1P01009 418 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 JCHAINP01591 159 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 HLA-AP01891 365 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 MELTFP08582 738 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 THRAP10827 490 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 RNH1P13489 461 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 HIST1H1CP16403 213 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 CRABP2P29373 138 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 SERPINB1P30740 379 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 RPL4P36578 427 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 CYB561P49447 251 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 IDH3GP51553 393 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 TLE4Q04727 773 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 MLLT11Q13015 90 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 SRSF6Q13247 344 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 TMEM187Q14656 261 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 LAGE3Q14657 143 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms