RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 MRM2Q9UI43 246 aaKnown RBP17.3■□□□□ 0.36
USP53-208ENST00000514305 PCDHGB5Q9Y5G0 923 aa17.3■□□□□ 0.36
USP53-208ENST00000514305 N6AMT1Q9Y5N5 214 aa17.3■□□□□ 0.36
USP53-208ENST00000514305 R4GMQ9 66 aa17.3■□□□□ 0.36
USP53-208ENST00000514305 PMF1-BGLAPU3KQ54 211 aa17.3■□□□□ 0.36
USP53-208ENST00000514305 CADP27708 2225 aa17.3■□□□□ 0.36
USP53-208ENST00000514305 HEATR1Q9H583 2144 aaKnown RBP17.3■□□□□ 0.36
USP53-208ENST00000514305 CSPG4Q6UVK1 2322 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 RGS10O43665 173 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 CDK1P06493 297 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 OR4A8P0C604 315 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 CRHBPP24387 322 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 LIPAP38571 399 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 KLF3P57682 345 aaPredicted RBP17.29■□□□□ 0.36
USP53-208ENST00000514305 LIPNQ5VXI9 398 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 RNLSQ5VYX0 342 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 MBNL2Q5VZF2 373 aaKnown RBP17.29■□□□□ 0.36
USP53-208ENST00000514305 FAM57BQ71RH2 274 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 MRPL21Q7Z2W9 205 aaKnown RBP17.29■□□□□ 0.36
USP53-208ENST00000514305 ZNF101Q8IZC7 436 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 SLC25A40Q8TBP6 338 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 MRPL24Q96A35 216 aaKnown RBP17.29■□□□□ 0.36
USP53-208ENST00000514305 C4orf36Q96KX1 117 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 BARX1Q9HBU1 254 aaPredicted RBP17.29■□□□□ 0.36
USP53-208ENST00000514305 BRD7Q9NPI1 651 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 FKBP14Q9NWM8 211 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 CGGBP1Q9UFW8 167 aaPredicted RBP17.29■□□□□ 0.36
USP53-208ENST00000514305 LRCH1Q9Y2L9 728 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 STARD10Q9Y365 291 aa17.29■□□□□ 0.36
USP53-208ENST00000514305 J3QL48 77 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 RPP14O95059 124 aaKnown RBP17.28■□□□□ 0.36
USP53-208ENST00000514305 NGFP01138 241 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 HTR1AP08908 422 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 RAC2P15153 192 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 ZNF250P15622 560 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 GABARAPL2P60520 117 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 SNRPD2P62316 118 aaKnown RBP17.28■□□□□ 0.36
USP53-208ENST00000514305 SLC35A2P78381 396 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 ZNF684Q5T5D7 378 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 PGAP1Q75T13 922 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 SSX6Q7RTT6 188 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 OR52N1Q8NH53 320 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 TRAF4Q9BUZ4 470 aaPredicted RBP17.28■□□□□ 0.36
USP53-208ENST00000514305 OR2J1Q9GZK6 312 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 CCDC90BQ9GZT6 254 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 DUSP21Q9H596 190 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 CYSLTR2Q9NS75 346 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 CBLN4Q9NTU7 201 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 DUSP13Q9UII6 198 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 GTF2A1LQ9UNN4 478 aa17.28■□□□□ 0.36
USP53-208ENST00000514305 CR1P17927 2039 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 TMEM129A0AVI4 362 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 EFNB3Q15768 340 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 TP53I3Q53FA7 332 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 ZMAT1Q5H9K5 638 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 BCL2L15Q5TBC7 163 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 FBXW12Q6X9E4 464 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 RFPL4BQ6ZWI9 263 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 PRSS48Q7RTY5 328 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 PRIMA1Q86XR5 153 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 CCDC54Q8NEL0 328 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 KLF14Q8TD94 323 aaPredicted RBP17.27■□□□□ 0.36
USP53-208ENST00000514305 MARS2Q96GW9 593 aaKnown RBP17.27■□□□□ 0.36
USP53-208ENST00000514305 MND1Q9BWT6 205 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 PTTG3PQ9NZH4 202 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 NUFIP1Q9UHK0 495 aaKnown RBP17.27■□□□□ 0.36
USP53-208ENST00000514305 OR52A1Q9UKL2 312 aa17.27■□□□□ 0.36
USP53-208ENST00000514305 CHD3Q12873 2000 aaKnown RBP17.26■□□□□ 0.35
USP53-208ENST00000514305 JMJD1CQ15652 2540 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 A0A0U1RQV5 110 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 A0A1W2PPW3 197 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 PLSCR5A0PG75 271 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 GPRIN2O60269 458 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 MTRF1O75570 445 aaKnown RBP17.26■□□□□ 0.35
USP53-208ENST00000514305 ERCC1P07992 297 aaPredicted RBP17.26■□□□□ 0.35
USP53-208ENST00000514305 LIMS3P0CW19 117 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 LIMS4P0CW20 117 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 SLC2A1P11166 492 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 ATP6V1B1P15313 513 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 DDOSTP39656 456 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 ETV1P50549 477 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 OR12D2P58182 307 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 TAS2R43P59537 309 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 ADIPOQQ15848 244 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 CCDC58Q4VC31 144 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 DTX2Q86UW9 622 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 NAA40Q86UY6 237 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 FTMTQ8N4E7 242 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 RFLNBQ8N5W9 214 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 HAVCR1Q96D42 359 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 SIGLEC11Q96RL6 698 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 CDCA4Q9BXL8 241 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 REG4Q9BYZ8 158 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 PBOV1Q9GZY1 135 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 MS4A5Q9H3V2 200 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 FAM206AQ9NX38 181 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 UBAP1Q9NZ09 502 aa17.26■□□□□ 0.35
USP53-208ENST00000514305 NOP16Q9Y3C1 178 aaKnown RBP17.26■□□□□ 0.35
USP53-208ENST00000514305 GGT3PA6NGU5 568 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 TIMM8AO60220 97 aaPredicted RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms