RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 IL2RAP01589 272 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 ERCC1P07992 297 aaPredicted RBP8.71□□□□□ -1.02
CLIP1-204ENST00000501271 ZP3P21754 424 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 SRSF4Q08170 494 aaKnown RBP8.71□□□□□ -1.02
CLIP1-204ENST00000501271 ZNF239Q16600 458 aaKnown RBP8.71□□□□□ -1.02
CLIP1-204ENST00000501271 LRRC37A5PQ49AS3 106 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 DMRTC1Q5HYR2 192 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 FAM57BQ71RH2 274 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 GLRX5Q86SX6 157 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 ADAD2Q8NCV1 583 aaKnown RBP8.71□□□□□ -1.02
CLIP1-204ENST00000501271 OR1S1Q8NH92 325 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 SEC22AQ96IW7 307 aa8.71□□□□□ -1.02
CLIP1-204ENST00000501271 MRPS28Q9Y2Q9 187 aaKnown RBP8.71□□□□□ -1.02
CLIP1-204ENST00000501271 C9orf170A2RU37 121 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 SULT2B1O00204 365 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 SOCS1O15524 211 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 MPIG6BO95866 241 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 PMP2P02689 132 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 CLDN17P56750 224 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ZMYND11Q15326 602 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 KCNMB1Q16558 191 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 HLA-BQ31612 363 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 PLAC9Q5JTB6 97 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 LPCAT3Q6P1A2 487 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 RHOUQ7L0Q8 258 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 SLC51BQ86UW2 128 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ZDHHC22Q8N966 263 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 OR5M9Q8NGP3 310 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 SLC25A43Q8WUT9 341 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-204ENST00000501271 HLA-CQ95604 372 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 NUDT16L1Q9BRJ7 211 aaKnown RBP8.7□□□□□ -1.02
CLIP1-204ENST00000501271 PDCD10Q9BUL8 212 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 WDR13Q9H1Z4 485 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 BANF2Q9H503 90 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 PLEKHA6Q9Y2H5 1048 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 HDGFL3Q9Y3E1 203 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 IGKV1-9A0A0C4DH69 117 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 LOC105371267A0A1B0GV96 52 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ZNF726A6NNF4 738 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 CDC14BO60729 498 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 SCGNO76038 276 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 HCKP08631 526 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 CCL1P22362 96 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ADH6P28332 368 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 AVPR2P30518 371 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 EIF1P41567 113 aaKnown RBP8.7□□□□□ -1.02
CLIP1-204ENST00000501271 GSK3AP49840 483 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ATP1B3P54709 279 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 PHYHD1Q5SRE7 291 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 C11orf87Q6NUJ2 197 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ZNF283Q8N7M2 679 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 DTWD2Q8NBA8 298 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 RELL2Q8NC24 303 aaPredicted RBP8.7□□□□□ -1.02
CLIP1-204ENST00000501271 GALNT11Q8NCW6 608 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 MITD1Q8WV92 249 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ZC3H10Q96K80 434 aaKnown RBP8.7□□□□□ -1.02
CLIP1-204ENST00000501271 ZNF416Q9BWM5 594 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 TNFSF18Q9UNG2 199 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 CNTRLQ7Z7A1 2325 aa8.7□□□□□ -1.02
CLIP1-204ENST00000501271 SDK2Q58EX2 2172 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 MGMTP16455 207 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 AGTR1P30556 359 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 SLC35A1P78382 337 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 IL13RA1P78552 427 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 FGL1Q08830 312 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 JMJD6Q6NYC1 403 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-204ENST00000501271 TMPPEQ6ZT21 453 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 PGAP1Q75T13 922 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 OR2W3Q7Z3T1 314 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 NAA40Q86UY6 237 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 DTX1Q86Y01 620 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 CASTOR1Q8WTX7 329 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 PPP1R1CQ8WVI7 109 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 ST8SIA2Q92186 375 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 TMEM41AQ96HV5 264 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 PFDN2Q9UHV9 154 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 GPN3Q9UHW5 284 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-204ENST00000501271 SIT1Q9Y3P8 196 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 SPEF1Q9Y4P9 236 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 LOC102723996A0A087X1L8 192 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 IGHV1-45A0A0A0MS14 117 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 IGHV3-15A0A0B4J1V0 119 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 LOC102725191A0A1B0GVB3 256 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 RNF222A6NCQ9 220 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 A8MXK9 166 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 FAM25EA8MYX2 175 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 LGALS8O00214 317 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 TP53I11O14683 189 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 EFSO43281 561 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 RAD51DO75771 328 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 UMODP07911 640 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 CCL3P10147 92 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 FGF5P12034 268 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 HIST1H1DP16402 221 aaKnown RBP8.69□□□□□ -1.02
CLIP1-204ENST00000501271 AKR1C4P17516 323 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 HLA-GP17693 338 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 VAMP1P23763 118 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 TMEM50BP56557 158 aa8.69□□□□□ -1.02
CLIP1-204ENST00000501271 ATXN7L3Q14CW9 347 aaPredicted RBP8.69□□□□□ -1.02
CLIP1-204ENST00000501271 MICBQ29980 383 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms