RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CHMP1AQ9HD42 196 aaPredicted RBP7.36□□□□□ -1.23
USP54-215ENST00000497106 SLC7A10Q9NS82 523 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 SULT1C2O00338 296 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 CRTAPO75718 401 aaPredicted RBP7.36□□□□□ -1.23
USP54-215ENST00000497106 RAD51DO75771 328 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 C4BPBP20851 252 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 CTSSP25774 331 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 OR3A3P47888 321 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 EVX1P49640 407 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 P2RY4P51582 365 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 TBRG1Q3YBR2 411 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 SLC30A7Q8NEW0 376 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 TMEM59Q9BXS4 323 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 TRBV5-7A0A0A0MS05 114 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 LOC390937A0A1W2PQ73 354 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 KIR3DL2P43630 455 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 MEF2DQ14814 521 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 GLYATL3Q5SZD4 288 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 CENPSQ8N2Z9 138 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 OR51T1Q8NGJ9 327 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 KLHDC3Q9BQ90 382 aa7.36□□□□□ -1.23
USP54-215ENST00000497106 METTL17Q9H7H0 456 aaPredicted RBP7.36□□□□□ -1.23
USP54-215ENST00000497106 TRAV18A0A075B6X5 111 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 CRYZL1O95825 349 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 MPIG6BO95866 241 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 NRASP01111 189 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 CRYAAP02489 173 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 SLC2A1P11166 492 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 CAV3P56539 151 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 UTS2BQ765I0 119 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 ZNF485Q8NCK3 441 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 FAM206AQ9NX38 181 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 TP53TG5Q9Y2B4 290 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 CACNA1HO95180 2353 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 FAM230AA0A1W2PPH8 454 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 FUOMA2VDF0 154 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 TRAPPC2LH3BP13 241 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 HTR3BO95264 441 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 IDH3GP51553 393 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 MFGE8Q08431 387 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 ACSF3Q4G176 576 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 ZDHHC23Q8IYP9 409 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 HTRA1Q92743 480 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 ABHD17AQ96GS6 310 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 NPAS1Q99742 590 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 THAP7Q9BT49 309 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 RAB9BQ9NP90 201 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 ZNF71Q9NQZ8 489 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 TRGV8A0A0C4DH27 118 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PLSCR5A0PG75 271 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 RAMP1O60894 148 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PPA1Q15181 289 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 ZNF718Q3SXZ3 478 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 ZNF782Q6ZMW2 699 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 CFAP77Q6ZQR2 320 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 Q6ZT83 130 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 CISD2Q8N5K1 135 aaKnown RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 ZSCAN4Q8NAM6 433 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 RND1Q92730 232 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PIGTQ969N2 578 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PTX4Q96A99 478 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 MAP6Q96JE9 813 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PLK3Q9H4B4 646 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 C12orf4Q9NQ89 552 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 CYSLTR2Q9NS75 346 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 POLDIP2Q9Y2S7 368 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 LIPGQ9Y5X9 500 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PIGBOS1A0A0B4J2F0 54 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 ALDOBP05062 364 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 GSK3AP49840 483 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 NANOS3P60323 173 aaKnown RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 ENDOGQ14249 297 aaKnown RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 RNASE12Q5GAN4 147 aaKnown RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 ZNF573Q86YE8 665 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 RDH10Q8IZV5 341 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 ZIC4Q8N9L1 334 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PPP1R35Q8TAP8 253 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 EXTL1Q92935 676 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 SPRR3Q9UBC9 169 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PLEKHB1Q9UF11 243 aaPredicted RBP7.35□□□□□ -1.23
USP54-215ENST00000497106 MPC1Q9Y5U8 109 aa7.35□□□□□ -1.23
USP54-215ENST00000497106 PRSS44E7EML9 344 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 GABARAPH6UMI1 98 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 LYRM1O43325 122 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 TIMM8AO60220 97 aaPredicted RBP7.34□□□□□ -1.23
USP54-215ENST00000497106 PPP3CBP16298 524 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 SPINK2P20155 84 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 GLP1RP43220 463 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 GCNT2Q8N0V5 402 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 PRSS35Q8N3Z0 413 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 RFLNBQ8N5W9 214 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 HAVCR1Q96D42 359 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 ELOVL5Q9NYP7 299 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 NDRG3Q9UGV2 375 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 POU2F3Q9UKI9 436 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 SIRT4Q9Y6E7 314 aaPredicted RBP7.34□□□□□ -1.23
USP54-215ENST00000497106 TTRP02766 147 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 IL7P13232 177 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 IRF2P14316 349 aa7.34□□□□□ -1.23
USP54-215ENST00000497106 TAS2R19P59542 299 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms