RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	LGALS13	Q9UHV8	139 aa		3.57	□□□□□ -1.84
VPS52-222	ENST00000495981	PSORS1C1	Q9UIG5	152 aa		3.57	□□□□□ -1.84
VPS52-222	ENST00000495981	TMED7	Q9Y3B3	224 aa		3.57	□□□□□ -1.84
VPS52-222	ENST00000495981	RRP15	Q9Y3B9	282 aa	Known RBP	3.57	□□□□□ -1.84
VPS52-222	ENST00000495981	WDR45	Q9Y484	360 aa		3.57	□□□□□ -1.84
VPS52-222	ENST00000495981	HERC1	Q15751	4861 aa		3.57	□□□□□ -1.84
VPS52-222	ENST00000495981	HUWE1	Q7Z6Z7	4374 aa	Known RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	HECTD4	Q9Y4D8	3996 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	IGHV2OR16-5	A0A0B4J2B6	119 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981		A0A0U1RRA0	63 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981		E9PBE3	544 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981		H0YHG0	523 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	hCG_2039718	K7EN88	272 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	HMGN4	O00479	90 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	COPE	O14579	308 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ARPC2	O15144	300 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	TRAF3IP2	O43734	574 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	MRPL33	O75394	65 aa	Known RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	RP2	O75695	350 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SERPINI2	O75830	405 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF432	O94892	652 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	STAMBP	O95630	424 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	LGI1	O95970	557 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	OR4A8	P0C604	315 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZCCHC18	P0CG32	403 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	OR12D1	P0DN82	309 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF12	P17014	697 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SERPINB5	P36952	375 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	CDKN2C	P42773	168 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	IDH2	P48735	452 aa	Known RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	PITPNB	P48739	271 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	POLR2H	P52434	150 aa	Known RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	CLDN8	P56748	225 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	PRPS1	P60891	318 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	POU3F1	Q03052	451 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	REL	Q04864	619 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SLC34A1	Q06495	639 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	CASP8	Q14790	479 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SPANXN4	Q5MJ08	99 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	OTUD3	Q5T2D3	398 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	IL23R	Q5VWK5	629 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	OR4A47	Q6IF82	309 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	C6orf89	Q6UWU4	347 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF836	Q6ZNA1	936 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	COMTD1	Q86VU5	262 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	TMEM123	Q8N131	208 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	CLIP4	Q8N3C7	705 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SVOPL	Q8N434	492 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ARFGAP2	Q8N6H7	521 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	NATD1	Q8N6N6	113 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	TMEM99	Q8N816	258 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	MINDY2	Q8NBR6	621 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	OR4A15	Q8NGL6	344 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	OR4A16	Q8NH70	328 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	MAGEE2	Q8TD90	523 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	GGH	Q92820	318 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZG16B	Q96DA0	208 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	FBXO17	Q96EF6	278 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZHX1-C8orf76	Q96EF9	292 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	TMEM19	Q96HH6	336 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	TEX37	Q96LM6	180 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF75A	Q96N20	296 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	CCDC115	Q96NT0	180 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZIM3	Q96PE6	472 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF317	Q96PQ6	595 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SORT1	Q99523	831 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	TXN2	Q99757	166 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SF3B5	Q9BWJ5	86 aa	Known RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	RSPO3	Q9BXY4	272 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	SIRPD	Q9H106	197 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	PDP1	Q9P0J1	537 aa	Predicted RBP	3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	ZDHHC2	Q9UIJ5	367 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	TRAPPC4	Q9Y296	219 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	COX11	Q9Y6N1	276 aa		3.56	□□□□□ -1.84
VPS52-222	ENST00000495981	IGKV1D-42	A0A075B6H8	117 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	NR5A2	O00482	541 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	KLF11	O14901	512 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ANGPT2	O15123	496 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CFLAR	O15519	480 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	TYROBP	O43914	113 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	EIF1B	O60739	113 aa	Known RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	UPK3A	O75631	287 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	FSHB	P01225	129 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	CCDC159	P0C7I6	412 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	PNMT	P11086	282 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	PRG2	P13727	222 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	DAO	P14920	347 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	ZNF14	P17017	642 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	PRDX6	P30041	224 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	HOXD3	P31249	432 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SLC1A3	P43003	542 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	GLIPR1	P48060	266 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	IDH3G	P51553	393 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	DVL1P1	P54792	670 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SH3BGR	P55822	239 aa	Predicted RBP	3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	OR2B6	P58173	313 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	HILS1	P60008	231 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	SLC35A1	P78382	337 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	TGFBR3	Q03167	851 aa		3.55	□□□□□ -1.84
VPS52-222	ENST00000495981	EMX2	Q04743	252 aa		3.55	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms