RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 IGHV3-64DA0A0J9YX35 117 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 ANKRD30BLA7E2S9 258 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 ANKRD65E5RJM6 399 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 WNT9BO14905 357 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 MLNRO43193 412 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 ZNF254O75437 659 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 TGFAP01135 160 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 HOXB4P17483 251 aaPredicted RBP13.48□□□□□ -0.25
LIME1-209ENST00000494776 DDOSTP39656 456 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 RIDAP52758 137 aaKnown RBP13.48□□□□□ -0.25
LIME1-209ENST00000494776 PSMA6P60900 246 aaKnown RBP13.48□□□□□ -0.25
LIME1-209ENST00000494776 CXCR4P61073 352 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 DEGS2Q6QHC5 323 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 PRSS45Q7RTY3 260 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 ZNF679Q8IYX0 411 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 LINC01356Q8N9X3 169 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 SPSB4Q96A44 273 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 SLC29A1Q99808 456 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 RGCCQ9H4X1 137 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 CLN6Q9NWW5 311 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 MRPL15Q9P015 296 aaKnown RBP13.48□□□□□ -0.25
LIME1-209ENST00000494776 KCNS2Q9ULS6 477 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 COPS3Q9UNS2 423 aa13.48□□□□□ -0.25
LIME1-209ENST00000494776 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.47□□□□□ -0.25
LIME1-209ENST00000494776 TMEM269A0A1B0GVZ9 245 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 IFNL4K9M1U5 179 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 SBK2P0C263 348 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 FAM3AP98173 230 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 TMED1Q13445 227 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 ZNF829Q3KNS6 432 aaPredicted RBP13.47□□□□□ -0.25
LIME1-209ENST00000494776 ZNF322Q6U7Q0 402 aaPredicted RBP13.47□□□□□ -0.25
LIME1-209ENST00000494776 ZNF771Q7L3S4 317 aaPredicted RBP13.47□□□□□ -0.25
LIME1-209ENST00000494776 UBE2FQ969M7 185 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 OR8B4Q96RC9 309 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 MBOAT4Q96T53 435 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 TBX5Q99593 518 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 GAL3ST1Q99999 423 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 SOX7Q9BT81 388 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 ADAT1Q9BUB4 502 aaKnown RBP13.47□□□□□ -0.25
LIME1-209ENST00000494776 GCM1Q9NP62 436 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.47□□□□□ -0.25
LIME1-209ENST00000494776 NPTNQ9Y639 398 aa13.47□□□□□ -0.25
LIME1-209ENST00000494776 LRRC30A6NM36 301 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 SNTNA6NMZ2 147 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 GMDSO60547 372 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 LMX1BO60663 402 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 APOL3O95236 402 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 IRF2P14316 349 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 ANPEPP15144 967 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 GSK3AP49840 483 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 CDH15P55291 814 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 ROM1Q03395 351 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 MZT1Q08AG7 82 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 RCN1Q15293 331 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 MEDAGQ5VYS4 303 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 MOGAT3Q86VF5 341 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 COMMD2Q86X83 199 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 GALNT4Q8N4A0 578 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 ZNF555Q8NEP9 628 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 OR10H4Q8NGA5 316 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 OR8B12Q8NGG6 310 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 OR8S1Q8NH09 359 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 ZNF420Q8TAQ5 688 aaPredicted RBP13.46□□□□□ -0.25
LIME1-209ENST00000494776 RAB39BQ96DA2 213 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 APOL4Q9BPW4 351 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 UBAP1Q9NZ09 502 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 ZNF319Q9P2F9 582 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 PCDHB10Q9UN67 800 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 GTF2A1LQ9UNN4 478 aa13.46□□□□□ -0.25
LIME1-209ENST00000494776 ABCA2Q9BZC7 2435 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 CSPG4Q6UVK1 2322 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 LOC100130705A0A1B0GUX0 176 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 hCG_38984A0A1B0GV85 526 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 A0A1B0GWJ7 208 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 ACOD1A6NK06 481 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 B4DSR2 109 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 ENTPD6O75354 484 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 OR2T7P0C7T2 308 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 DCTDP32321 178 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 GNALP38405 381 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 CD200P41217 278 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 MMP16P51512 607 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 SNRPGP62308 76 aaKnown RBP13.45□□□□□ -0.26
LIME1-209ENST00000494776 EGR3Q06889 387 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 HNRNPA0Q13151 305 aaKnown RBP13.45□□□□□ -0.26
LIME1-209ENST00000494776 SNCBQ16143 134 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 LRRC36Q1X8D7 754 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 KLBQ86Z14 1044 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 FTMTQ8N4E7 242 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 RFLNBQ8N5W9 214 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 CELF2-AS1Q8N7Q2 184 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 SPERTQ8NA61 448 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 CSNK2A3Q8NEV1 391 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 OR11L1Q8NGX0 322 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 OR2T27Q8NH04 317 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 DVL3Q92997 716 aaPredicted RBP13.45□□□□□ -0.26
LIME1-209ENST00000494776 ZNF665Q9H7R5 613 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 LPAR2Q9HBW0 351 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 FAM206AQ9NX38 181 aa13.45□□□□□ -0.26
LIME1-209ENST00000494776 DCAF16Q9NXF7 216 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms