RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 MTNR1AP48039 350 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 RIDAP52758 137 aaKnown RBP13.46□□□□□ -0.25
UPF3A-208ENST00000484246 CXCR4P61073 352 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 FAM3AP98173 230 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 TIGD6Q17RP2 521 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 TMEM249Q2WGJ8 235 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF829Q3KNS6 432 aaPredicted RBP13.46□□□□□ -0.25
UPF3A-208ENST00000484246 ZNF684Q5T5D7 378 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 FAM57BQ71RH2 274 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 KRT74Q7RTS7 529 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 SPRYD4Q8WW59 207 aaPredicted RBP13.46□□□□□ -0.25
UPF3A-208ENST00000484246 HPS1Q92902 700 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 SGK3Q96BR1 496 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 REEP6Q96HR9 211 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 PGAM5Q96HS1 289 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 Q96MT0 163 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 TMEM100Q9NV29 134 aa13.46□□□□□ -0.25
UPF3A-208ENST00000484246 NUFIP1Q9UHK0 495 aaKnown RBP13.46□□□□□ -0.25
UPF3A-208ENST00000484246 CLDN25C9JDP6 229 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 IFNL4K9M1U5 179 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 TPD52L2O43399 206 aaKnown RBP13.45□□□□□ -0.26
UPF3A-208ENST00000484246 LY6G6DO95868 133 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 CD200P41217 278 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 GATA4P43694 442 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 GPR6P46095 362 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-208ENST00000484246 ACTC1P68032 377 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 ACTA1P68133 377 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 SLC3A1Q07837 685 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 SNCBQ16143 134 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 HFEQ30201 348 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 LPCAT4Q643R3 524 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 CLEC9AQ6UXN8 241 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 BHLHE23Q8NDY6 225 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 ZNF555Q8NEP9 628 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 OR8B12Q8NGG6 310 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 OR56B2PQ8NGI1 322 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 C1orf159Q96HA4 380 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 MEGF10Q96KG7 1140 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 OR2V2Q96R30 315 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 SMR3AQ99954 134 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 APOL4Q9BPW4 351 aa13.45□□□□□ -0.26
UPF3A-208ENST00000484246 GSX1Q9H4S2 264 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-208ENST00000484246 MRM2Q9UI43 246 aaKnown RBP13.45□□□□□ -0.26
UPF3A-208ENST00000484246 NF1P21359 2839 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 TMEM269A0A1B0GVZ9 245 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 A0A1W2PQL4 384 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-208ENST00000484246 GGT3PA6NGU5 568 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 TBX1O43435 398 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 CD5LO43866 347 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 SULT1C4O75897 302 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 SRP9P49458 86 aaKnown RBP13.44□□□□□ -0.26
UPF3A-208ENST00000484246 CHN2P52757 468 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 ISL1P61371 349 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 ZNF91Q05481 1191 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 IL18R1Q13478 541 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 LRRC36Q1X8D7 754 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 ZNF181Q2M3W8 571 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 SPRNQ5BIV9 151 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 ZNF691Q5VV52 312 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 TTC23Q5W5X9 447 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 SSX6Q7RTT6 188 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 GALNT4Q8N4A0 578 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 MAPK1IP1LQ8NDC0 245 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 CSNK2A3Q8NEV1 391 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 OR10AD1Q8NGE0 317 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 ITLN1Q8WWA0 313 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 ERGIC1Q969X5 290 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 RNPEPL1Q9HAU8 725 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 MRPS18AQ9NVS2 196 aaKnown RBP13.44□□□□□ -0.26
UPF3A-208ENST00000484246 IKZF2Q9UKS7 526 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 EXOGQ9Y2C4 368 aaKnown RBP13.44□□□□□ -0.26
UPF3A-208ENST00000484246 PCDHGB1Q9Y5G3 927 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 CACNG2Q9Y698 323 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 R4GMQ9 66 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 MTORP42345 2549 aa13.44□□□□□ -0.26
UPF3A-208ENST00000484246 MAP1AP78559 2803 aaPredicted RBP13.44□□□□□ -0.26
UPF3A-208ENST00000484246 MED13LQ71F56 2210 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 C3orf80F5H4A9 247 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 GMDSO60547 372 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 CDC14BO60729 498 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 FSTL3O95633 263 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 KRT8P05787 483 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 DBTP11182 482 aaKnown RBP13.43□□□□□ -0.26
UPF3A-208ENST00000484246 ATP6V1B1P15313 513 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 GSK3AP49840 483 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 GZMKP49863 264 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 ADARB1P78563 741 aaKnown RBP13.43□□□□□ -0.26
UPF3A-208ENST00000484246 SLC34A1Q06495 639 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 Q6ZSR3 168 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 EGFL6Q8IUX8 553 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 SPERTQ8NA61 448 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 PLPP7Q8NBV4 271 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 OR10H4Q8NGA5 316 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 Q8TCH9 128 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 APH1BQ8WW43 257 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 RNFT2Q96EX2 444 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 TIMD4Q96H15 378 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 LYZL4Q96KX0 146 aa13.43□□□□□ -0.26
UPF3A-208ENST00000484246 ADAT1Q9BUB4 502 aaKnown RBP13.43□□□□□ -0.26
UPF3A-208ENST00000484246 VCXQ9H320 206 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms