RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 UCP2P55851 309 aa8.79□□□□□ -1
USP39-215ENST00000481409 VBP1P61758 197 aa8.79□□□□□ -1
USP39-215ENST00000481409 NAAAQ02083 359 aa8.79□□□□□ -1
USP39-215ENST00000481409 RIPPLY1Q0D2K3 151 aa8.79□□□□□ -1
USP39-215ENST00000481409 DYNC1I2Q13409 638 aaKnown RBP8.79□□□□□ -1
USP39-215ENST00000481409 OR8B8Q15620 311 aa8.79□□□□□ -1
USP39-215ENST00000481409 FOXB2Q5VYV0 432 aa8.79□□□□□ -1
USP39-215ENST00000481409 C22orf42Q6IC83 251 aa8.79□□□□□ -1
USP39-215ENST00000481409 FBXW12Q6X9E4 464 aa8.79□□□□□ -1
USP39-215ENST00000481409 LINC00299Q6ZSB3 139 aa8.79□□□□□ -1
USP39-215ENST00000481409 UTS2BQ765I0 119 aa8.79□□□□□ -1
USP39-215ENST00000481409 COMMD2Q86X83 199 aa8.79□□□□□ -1
USP39-215ENST00000481409 NKAIN3Q8N8D7 197 aa8.79□□□□□ -1
USP39-215ENST00000481409 NUP37Q8NFH4 326 aa8.79□□□□□ -1
USP39-215ENST00000481409 SEMA6DQ8NFY4 1073 aa8.79□□□□□ -1
USP39-215ENST00000481409 OR14K1Q8NGZ2 314 aa8.79□□□□□ -1
USP39-215ENST00000481409 ITLN2Q8WWU7 325 aaPredicted RBP8.79□□□□□ -1
USP39-215ENST00000481409 SLC7A6Q92536 515 aa8.79□□□□□ -1
USP39-215ENST00000481409 RGP1Q92546 391 aaPredicted RBP8.79□□□□□ -1
USP39-215ENST00000481409 SGK3Q96BR1 496 aa8.79□□□□□ -1
USP39-215ENST00000481409 FOXRED1Q96CU9 486 aaPredicted RBP8.79□□□□□ -1
USP39-215ENST00000481409 CPNE2Q96FN4 548 aaPredicted RBP8.79□□□□□ -1
USP39-215ENST00000481409 REEP6Q96HR9 211 aa8.79□□□□□ -1
USP39-215ENST00000481409 DACH2Q96NX9 599 aa8.79□□□□□ -1
USP39-215ENST00000481409 OR14A2Q96R54 314 aa8.79□□□□□ -1
USP39-215ENST00000481409 CENPOQ9BU64 300 aa8.79□□□□□ -1
USP39-215ENST00000481409 MRI1Q9BV20 369 aa8.79□□□□□ -1
USP39-215ENST00000481409 NAA50Q9GZZ1 169 aaKnown RBP8.79□□□□□ -1
USP39-215ENST00000481409 ESRP2Q9H6T0 727 aaKnown RBP8.79□□□□□ -1
USP39-215ENST00000481409 PLEKHA1Q9HB21 404 aa8.79□□□□□ -1
USP39-215ENST00000481409 PTTG2Q9NZH5 202 aa8.79□□□□□ -1
USP39-215ENST00000481409 A3GALT2U3KPV4 340 aa8.79□□□□□ -1
USP39-215ENST00000481409 IGHV2OR16-5A0A0B4J2B6 119 aa8.78□□□□□ -1
USP39-215ENST00000481409 hCG_38984A0A1B0GV85 526 aa8.78□□□□□ -1
USP39-215ENST00000481409 FAM90A27PA6NNH2 459 aa8.78□□□□□ -1
USP39-215ENST00000481409 P2RY10O00398 339 aa8.78□□□□□ -1
USP39-215ENST00000481409 SMPD2O60906 423 aa8.78□□□□□ -1
USP39-215ENST00000481409 SLC2A1P11166 492 aa8.78□□□□□ -1
USP39-215ENST00000481409 RAC2P15153 192 aa8.78□□□□□ -1
USP39-215ENST00000481409 ZNF20P17024 532 aa8.78□□□□□ -1
USP39-215ENST00000481409 CD40P25942 277 aa8.78□□□□□ -1
USP39-215ENST00000481409 CALRP27797 417 aaKnown RBP8.78□□□□□ -1
USP39-215ENST00000481409 CFPP27918 469 aa8.78□□□□□ -1
USP39-215ENST00000481409 RORCP51449 518 aa8.78□□□□□ -1
USP39-215ENST00000481409 PPP3R1P63098 170 aa8.78□□□□□ -1
USP39-215ENST00000481409 HGFACQ04756 655 aa8.78□□□□□ -1
USP39-215ENST00000481409 TFF3Q07654 80 aa8.78□□□□□ -1
USP39-215ENST00000481409 DGUOKQ16854 277 aa8.78□□□□□ -1
USP39-215ENST00000481409 SNAI3Q3KNW1 292 aa8.78□□□□□ -1
USP39-215ENST00000481409 GLYATL3Q5SZD4 288 aa8.78□□□□□ -1
USP39-215ENST00000481409 MBNL2Q5VZF2 373 aaKnown RBP8.78□□□□□ -1
USP39-215ENST00000481409 MRPL21Q7Z2W9 205 aaKnown RBP8.78□□□□□ -1
USP39-215ENST00000481409 NAA40Q86UY6 237 aa8.78□□□□□ -1
USP39-215ENST00000481409 AP3S1Q92572 193 aa8.78□□□□□ -1
USP39-215ENST00000481409 RPL3LQ92901 407 aaKnown RBP8.78□□□□□ -1
USP39-215ENST00000481409 PIGTQ969N2 578 aa8.78□□□□□ -1
USP39-215ENST00000481409 SLC22A4Q9H015 551 aa8.78□□□□□ -1
USP39-215ENST00000481409 DCSTAMPQ9H295 470 aa8.78□□□□□ -1
USP39-215ENST00000481409 NOX4Q9NPH5 578 aa8.78□□□□□ -1
USP39-215ENST00000481409 CCDC59Q9P031 241 aaKnown RBP8.78□□□□□ -1
USP39-215ENST00000481409 ZNF319Q9P2F9 582 aa8.78□□□□□ -1
USP39-215ENST00000481409 NOP16Q9Y3C1 178 aaKnown RBP8.78□□□□□ -1
USP39-215ENST00000481409 KLF2Q9Y5W3 355 aaPredicted RBP8.78□□□□□ -1
USP39-215ENST00000481409 SPENQ96T58 3664 aaKnown RBP8.77□□□□□ -1
USP39-215ENST00000481409 RP1L1Q8IWN7 2480 aaPredicted RBP8.77□□□□□ -1.01
USP39-215ENST00000481409 ZNF816-ZNF321PA0A0X1KG74 233 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 A0A1W2PR80 420 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 WIPF3A6NGB9 483 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 TUBAL3A6NHL2 446 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 M0R1B8 84 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 CASKO14936 926 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 AGFG2O95081 481 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 ALDOBP05062 364 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 CD37P11049 281 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 IGFBP3P17936 291 aaPredicted RBP8.77□□□□□ -1.01
USP39-215ENST00000481409 RAB3BP20337 219 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 NR4A1P22736 598 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 GLRXP35754 106 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 GNALP38405 381 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 WNT5AP41221 380 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 GSK3AP49840 483 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 ZNF83P51522 516 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 SCAND1P57086 179 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 PPP1CBP62140 327 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 NCS1P62166 190 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 FAM3AP98173 230 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 GK2Q14410 553 aaPredicted RBP8.77□□□□□ -1.01
USP39-215ENST00000481409 MOGQ16653 247 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 ZNF718Q3SXZ3 478 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 BEX5Q5H9J7 111 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 ZNF529Q6P280 563 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 RDH10Q8IZV5 341 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 DYNC2LI1Q8TCX1 351 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 ACOT12Q8WYK0 555 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 PPP1R14AQ96A00 147 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 SLC25A46Q96AG3 418 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 KCTD12Q96CX2 325 aaKnown RBP8.77□□□□□ -1.01
USP39-215ENST00000481409 TRMT61AQ96FX7 289 aaKnown RBP8.77□□□□□ -1.01
USP39-215ENST00000481409 LYZL4Q96KX0 146 aa8.77□□□□□ -1.01
USP39-215ENST00000481409 WFIKKN1Q96NZ8 548 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms