RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 RNASE1P07998 156 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 FMO3P31513 532 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 MICAQ29983 383 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 TEX30Q5JUR7 227 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 LINC01590Q5TEZ4 76 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 ARHGAP24Q8N264 748 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 OR56B2PQ8NGI1 322 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 SPSB4Q96A44 273 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 NUDT16L1Q9BRJ7 211 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 FN3KRPQ9HA64 309 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 RNF7Q9UBF6 113 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 BAIAP2Q9UQB8 552 aa15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 NOP16Q9Y3C1 178 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 SAMHD1Q9Y3Z3 626 aaKnown RBP15.64■□□□□ 0.09
CCDC88B-206ENST00000473405 DHRS12A0PJE2 317 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 GGT3PA6NGU5 568 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 ZNF878C9JN71 531 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 CLDN34H7C241 214 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 TRIM25Q14258 630 aaKnown RBP15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 SLC9A3R2Q15599 337 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 SPATC1Q76KD6 591 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 DHFR2Q86XF0 187 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 PLPP7Q8NBV4 271 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 OR6K6Q8NGW6 343 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 SGMS2Q8NHU3 365 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 KCNJ15Q99712 375 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 NIPSNAP1Q9BPW8 284 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 REEP1Q9H902 201 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 CENPMQ9NSP4 180 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 FAM53CQ9NYF3 392 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 PCDHGB1Q9Y5G3 927 aa15.63■□□□□ 0.09
CCDC88B-206ENST00000473405 MDFIC2A0A1B0GVS7 189 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 C3orf80F5H4A9 247 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 TNFRSF13BO14836 293 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 SPRY1O43609 319 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 FGF12P61328 243 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 FOXL1Q12952 345 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 SFRP4Q6FHJ7 346 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 CD300LDQ6UXZ3 194 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 NSL1Q96IY1 281 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 TECTBQ96PL2 329 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 ZNF747Q9BV97 191 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 MMADHCQ9H3L0 296 aaPredicted RBP15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 OPA3Q9H6K4 179 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 MED20Q9H944 212 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 SMURF1Q9HCE7 757 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 CMC2Q9NRP2 79 aa15.62■□□□□ 0.09
CCDC88B-206ENST00000473405 TGP01266 2768 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 FAM183AA6NL82 134 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 RIIAD1A6NNX1 92 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 LGALS8O00214 317 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 FCN3O75636 299 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 T-ENOLP0DO92 83 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 ZNF3P17036 446 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 MTNR1AP48039 350 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 CX3CR1P49238 355 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 TAF13Q15543 124 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 FAM98BQ52LJ0 330 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 BRD3OSQ6XYD6 125 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 ZNF826PQ6ZT77 177 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 PRSS45Q7RTY3 260 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 GCSAMQ8N6F7 178 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 IQCF1Q8N6M8 205 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 BOLLQ8N9W6 283 aaKnown RBP15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 OR10G2Q8NGC3 310 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 TAF15Q92804 592 aaKnown RBP eCLIP15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 SLC25A28Q96A46 364 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 CCT8L2Q96SF2 557 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 C1orf123Q9NWV4 160 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 N6AMT1Q9Y5N5 214 aa15.61■□□□□ 0.09
CCDC88B-206ENST00000473405 NOTCH1P46531 2555 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 OOEPA6NGQ2 149 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 XRCC2O43543 280 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 ENSAO43768 121 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 IFNGP01579 166 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 SFTPBP07988 381 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 NPY4RP50391 375 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 BLVRAP53004 296 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 GRB2P62993 217 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 FAM3AP98173 230 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 EIF2B1Q14232 305 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 OR8B8Q15620 311 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 KCNJ8Q15842 424 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 SLC16A9Q7RTY1 509 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 DPY19L4Q7Z388 723 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 WDR86Q86TI4 376 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 FAM90A1Q86YD7 464 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 RNF133Q8WVZ7 376 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 CCDC124Q96CT7 223 aaKnown RBP15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 ASB9Q96DX5 294 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 AMELYQ99218 206 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 MARCH7Q9H992 704 aa15.6■□□□□ 0.09
CCDC88B-206ENST00000473405 TMPRSS2O15393 492 aa15.59■□□□□ 0.09
CCDC88B-206ENST00000473405 ADAM20O43506 726 aa15.59■□□□□ 0.09
CCDC88B-206ENST00000473405 LHBP01229 141 aa15.59■□□□□ 0.09
CCDC88B-206ENST00000473405 GRPP07492 148 aa15.59■□□□□ 0.09
CCDC88B-206ENST00000473405 RAP2AP10114 183 aa15.59■□□□□ 0.09
CCDC88B-206ENST00000473405 MMP9P14780 707 aa15.59■□□□□ 0.09
CCDC88B-206ENST00000473405 CALB2P22676 271 aa15.59■□□□□ 0.09
CCDC88B-206ENST00000473405 GRK5P34947 590 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms