RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 NOP16Q9Y3C1 178 aaKnown RBP13.15□□□□□ -0.3
CCDC88B-205ENST00000472524 AQP12BA6NM10 295 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 ANXA2P07355 339 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 HSD11B1P28845 292 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 CX3CR1P49238 355 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 BLVRAP53004 296 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 GK3PQ14409 553 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 CD300LDQ6UXZ3 194 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 NLRC3Q7RTR2 1065 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 DPY19L4Q7Z388 723 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 SPATA24Q86W54 205 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 AQP12AQ8IXF9 295 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 BOLLQ8N9W6 283 aaKnown RBP13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 OR56B2PQ8NGI1 322 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 Q8TCH9 128 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 ERGIC1Q969X5 290 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 PLEKHA8Q96JA3 519 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 INTS14Q96SY0 518 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 SLC22A4Q9H015 551 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 OR51V1Q9H2C8 321 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 FN3KRPQ9HA64 309 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 NUP50Q9UKX7 468 aa13.14□□□□□ -0.31
CCDC88B-205ENST00000472524 ARRDC5A6NEK1 342 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 XRCC2O43543 280 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 E2F6O75461 281 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 GSTT1P30711 240 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 CD80P33681 288 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 SLC15A1P46059 708 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 PITPNBP48739 271 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 GRB2P62993 217 aaKnown RBP13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 TIGD6Q17RP2 521 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 KLF17Q5JT82 389 aaPredicted RBP13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 LYPD2Q6UXB3 125 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 BTNL3Q6UXE8 466 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 TRPM8Q7Z2W7 1104 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 HS3ST5Q8IZT8 346 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 SIGLECL1Q8N7X8 197 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 ZDHHC22Q8N966 263 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 ZMYND19Q96E35 227 aaPredicted RBP13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 ABHD6Q9BV23 337 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 OPA3Q9H6K4 179 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 DNAJC27Q9NZQ0 273 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 MRPL15Q9P015 296 aaKnown RBP13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 ZNF69Q9UC07 566 aa13.13□□□□□ -0.31
CCDC88B-205ENST00000472524 IGHV3OR16-10A0A075B7F0 116 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 IGHV2-70DA0A0C4DH43 119 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 A6NLC8 198 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 GYG2O15488 501 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 GMDSO60547 372 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 GLCEO94923 617 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 GRPP07492 148 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 PAICSP22234 425 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 CPT2P23786 658 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 PAX8Q06710 450 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 FLOT2Q14254 428 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 DNAL1Q4LDG9 190 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 AWAT1Q58HT5 328 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 SFRP4Q6FHJ7 346 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 RBMS3Q6XE24 437 aaKnown RBP13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 DCDC5Q6ZRR9 648 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 FAM57BQ71RH2 274 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 BCL6BQ8N143 479 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 SGMS2Q8NHU3 365 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 MMADHCQ9H3L0 296 aaPredicted RBP13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 ZNF556Q9HAH1 456 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 NTN4Q9HB63 628 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 BRD7Q9NPI1 651 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 RNF7Q9UBF6 113 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 CLN8Q9UBY8 286 aa13.12□□□□□ -0.31
CCDC88B-205ENST00000472524 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 PRR23D1E9PI22 279 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 C3orf80F5H4A9 247 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 FSTL3O95633 263 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 PRR23D2P0DMB1 279 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 ZNF121P58317 390 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 UBA52P62987 128 aaKnown RBP13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 PAX2Q02962 417 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 GINS1Q14691 196 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 OR8B8Q15620 311 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 GFOD2Q3B7J2 385 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 KLHL12Q53G59 568 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 WDR25Q64LD2 544 aaPredicted RBP13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 PLBD1Q6P4A8 553 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 LRRN1Q6UXK5 716 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 ZNF826PQ6ZT77 177 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 SHFQ7M4L6 423 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 BCAS4Q8TDM0 211 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 RNF133Q8WVZ7 376 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 RAB40AQ8WXH6 277 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 REEP6Q96HR9 211 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 TECTBQ96PL2 329 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 AMELYQ99218 206 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 TOR3AQ9H497 397 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 C1orf123Q9NWV4 160 aa13.11□□□□□ -0.31
CCDC88B-205ENST00000472524 TRAV40A0A0B4J280 105 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 hCG_1807616A0A1W2PRN6 198 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 ANKRD30BLA7E2S9 258 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 PHYHO14832 338 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 KCNAB3O43448 404 aa13.1□□□□□ -0.31
CCDC88B-205ENST00000472524 SELENOFO60613 162 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms