RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SCP2D1Q9UJQ7 156 aa12.15□□□□□ -0.46
CCDC88A-211ENST00000471947 CIB4A0PJX0 185 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 SGCEO43556 437 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 TRAF3IP2O43734 574 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 NXPH3O95157 252 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 ECDO95905 644 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF32P17041 273 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 GRK1Q15835 563 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 ADGRE4PQ86SQ3 457 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 MAML2Q8IZL2 1156 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF441Q8N8Z8 693 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 HOXB13Q92826 284 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 PLEKHJ1Q9NW61 149 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 ABCA1O95477 2261 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 TMEM82A0PJX8 343 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 MSR1P21757 451 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 COL19A1Q14993 1142 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 RSU1Q15404 277 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 CATSPERDQ86XM0 798 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 RAB3CQ96E17 227 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 HYLS1Q96M11 299 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 SORCS2Q96PQ0 1159 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 PINLYPA6NC86 204 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 NPIPB7O75200 414 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 OR7C1O76099 320 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 SERPINA5P05154 406 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 RIN1Q13671 783 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 EXD3Q8N9H8 876 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 OR9K2Q8NGE7 335 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 OR6M1Q8NGM8 313 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 MARCH1Q8TCQ1 289 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 SIGLEC12Q96PQ1 595 aa12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 HEATR1Q9H583 2144 aaKnown RBP12.14□□□□□ -0.47
CCDC88A-211ENST00000471947 MT-CO3P00414 261 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 MSX1P28360 303 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 BTCP35070 178 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 CD96P40200 585 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 EIF1P41567 113 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 SUCLG1P53597 346 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 RRADP55042 308 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 MRPL14Q6P1L8 145 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 NLRC3Q7RTR2 1065 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF454Q8N9F8 522 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ARHGAP5-AS1Q96IT6 56 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 POTEKPQ9BYX7 375 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 RBM7Q9Y580 266 aaKnown RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF850A8MQ14 1090 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 SC5DO75845 299 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 RPA2P15927 270 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 FOXG1P55316 489 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ARPC4P59998 168 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 IL13RA1P78552 427 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 KLF9Q13886 244 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 OR1C1Q15619 314 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ISXQ2M1V0 245 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 MUC20Q8N307 709 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 RELL2Q8NC24 303 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 KCNJ15Q99712 375 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF442Q9H7R0 627 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 NIPAL2Q9H841 368 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 DEPPQ9NTK1 212 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 RDH8Q9NYR8 311 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ABI3Q9P2A4 366 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF629Q9UEG4 869 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 TMEM131Q92545 1883 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 XRCC3O43542 346 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 CBR3O75828 277 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 LIFP15018 202 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 C2orf68Q2NKX9 166 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 FAM74A1Q5RGS3 127 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 C6orf201Q7Z4U5 140 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 C1QL2Q7Z5L3 287 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 DUSP18Q8NEJ0 188 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ELP5Q8TE02 316 aa12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF471Q9BX82 626 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF275Q9NSD4 429 aaPredicted RBP12.13□□□□□ -0.47
CCDC88A-211ENST00000471947 ANKRD11Q6UB99 2663 aaPredicted RBP12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 TEX13DA0A0J9YY54 714 aaPredicted RBP12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 SIGLEC5O15389 551 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 FARS2O95363 451 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 SYNGR4O95473 234 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 UBCP0CG48 685 aaKnown RBP12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 HNF4GQ14541 408 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 PLCXD3Q63HM9 321 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 BAIAP2L2Q6UXY1 529 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 PPP1R32Q7Z5V6 425 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 SLC22A24Q8N4F4 322 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 OR10S1Q8NGN2 331 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 OR4K15Q8NH41 348 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 ST7LQ8TDW4 575 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 BORCS8Q96FH0 119 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 TGIF2Q9GZN2 237 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 DCHS1Q96JQ0 3298 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 TXNDC12O95881 172 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 SP9P0CG40 484 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 FAM157BP0CG42 384 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 CD53P19397 219 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 CD34P28906 385 aa12.12□□□□□ -0.47
CCDC88A-211ENST00000471947 PER3P56645 1201 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms