RNA–Protein interactions for RNA: ENST00000471880.5

SSR4-208, Transcript of signal sequence receptor subunit 4, human

TSL 5

Gene SSR4, Length 785 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSR4-208	ENST00000471880	NOP16	Q9Y3C1	178 aa	Known RBP	12.49	□□□□□ -0.41
SSR4-208	ENST00000471880	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	12.48	□□□□□ -0.41
SSR4-208	ENST00000471880		A6NLC8	198 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	ANKRD30BL	A7E2S9	258 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	TMEM178B	H3BS89	294 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	PSMD9	O00233	223 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	PRKY	O43930	277 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	IGHV2-70	P01814	119 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	GRP	P07492	148 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	OTX1	P32242	354 aa	Predicted RBP	12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	KPNB1	Q14974	876 aa	Known RBP	12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	ZMYND11	Q15326	602 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	DCAF12L2	Q5VW00	463 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	PARP8	Q8N3A8	854 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	TCEANC	Q8N8B7	351 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	ZNF454	Q8N9F8	522 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	OR8S1	Q8NH09	359 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	C1orf159	Q96HA4	380 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	METTL17	Q9H7H0	456 aa	Predicted RBP	12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	MARCH7	Q9H992	704 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	ENOPH1	Q9UHY7	261 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	OAZ3	Q9UMX2	235 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	GTF2A1L	Q9UNN4	478 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	KLHDC2	Q9Y2U9	406 aa		12.48	□□□□□ -0.41
SSR4-208	ENST00000471880	SVEP1	Q4LDE5	3571 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880		A0A0G2JMP0	313 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880		A0A0X1KG70	313 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	hCG_1807616	A0A1W2PRN6	198 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	RNF212B	A8MTL3	300 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	IFNL4	K9M1U5	179 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	PNP	P00491	289 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	MDH2	P40926	338 aa	Known RBP	12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	OPRL1	P41146	370 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	ASRGL1	Q7L266	308 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	SLC16A9	Q7RTY1	509 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	BCDIN3D	Q7Z5W3	292 aa	Known RBP	12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	COMMD2	Q86X83	199 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	C1orf87	Q8N0U7	546 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	C19orf18	Q8NEA5	215 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	OR4M2	Q8NGB6	313 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	OR52H1	Q8NGJ2	320 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	CENPN	Q96H22	339 aa	Predicted RBP	12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	CNN2	Q99439	309 aa	Known RBP	12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	CIB1	Q99828	191 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	REPIN1	Q9BWE0	567 aa	Known RBP	12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	SLC22A4	Q9H015	551 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	OCEL1	Q9H607	264 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	OPA3	Q9H6K4	179 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	IKZF2	Q9UKS7	526 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	ORC6	Q9Y5N6	252 aa		12.47	□□□□□ -0.41
SSR4-208	ENST00000471880	FAM20B	O75063	409 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	RPS2	P15880	293 aa	Known RBP	12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	SLC2A5	P22732	501 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	EPHA2	P29317	976 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	GNAL	P38405	381 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	SRSF2	Q01130	221 aa	Known RBP	12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	ESCO2	Q56NI9	601 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	FAM201A	Q5SY85	155 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	KDM4D	Q6B0I6	523 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	KCTD18	Q6PI47	426 aa	Predicted RBP	12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	MUC20	Q8N307	709 aa	Predicted RBP	12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	DEFB108B	Q8NET1	73 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	SGK3	Q96BR1	496 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	DUS3L	Q96G46	650 aa	Known RBP	12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	SIGLEC11	Q96RL6	698 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	TEAD3	Q99594	435 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	PAPOLG	Q9BWT3	736 aa	Known RBP	12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	GABARAPL1	Q9H0R8	117 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	FN3KRP	Q9HA64	309 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	LRP12	Q9Y561	859 aa		12.46	□□□□□ -0.41
SSR4-208	ENST00000471880	PPIAL4E	A0A075B759	164 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	PPIAL4D	F5H284	164 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	PHF1	O43189	567 aa	Predicted RBP	12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	GMDS	O60547	372 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	FOXH1	O75593	365 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	RGS9	O75916	674 aa	Predicted RBP	12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	PPIAL4F	P0DN26	164 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	CFL1	P23528	166 aa	Known RBP	12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	SEC61A1	P61619	476 aa	Known RBP	12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	MZT1	Q08AG7	82 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	MAB21L1	Q13394	359 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	MPPED2	Q15777	294 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	TMEM155	Q4W5P6	130 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	SLX4IP	Q5VYV7	408 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	LRRC28	Q86X40	367 aa	Predicted RBP	12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	FAM81A	Q8TBF8	368 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	PKP2	Q99959	881 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	MRO	Q9BYG7	248 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	YIPF3	Q9GZM5	350 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	PATZ1	Q9HBE1	687 aa	Known RBP	12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	C14orf119	Q9NWQ9	140 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	C1orf123	Q9NWV4	160 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	MRPL15	Q9P015	296 aa	Known RBP	12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	METRN	Q9UJH8	293 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	PPIAL4A	Q9Y536	164 aa		12.45	□□□□□ -0.42
SSR4-208	ENST00000471880	LOC105371242	A0A075B767	164 aa		12.44	□□□□□ -0.42
SSR4-208	ENST00000471880	CCDC182	A6NF36	153 aa		12.44	□□□□□ -0.42
SSR4-208	ENST00000471880	SLC22A31	A6NKX4	558 aa		12.44	□□□□□ -0.42
SSR4-208	ENST00000471880	ZAR1L	A6NP61	321 aa		12.44	□□□□□ -0.42
SSR4-208	ENST00000471880	CEACAM18	A8MTB9	384 aa		12.44	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms