RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MRPS28Q9Y2Q9 187 aaKnown RBP12.08□□□□□ -0.48
USP40-208ENST00000450966 BAZ2AQ9UIF9 1905 aaKnown RBP12.08□□□□□ -0.48
USP40-208ENST00000450966 TMEM269A0A1B0GVZ9 245 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 CRYABP02511 175 aaKnown RBP12.08□□□□□ -0.48
USP40-208ENST00000450966 PARS2Q7L3T8 475 aaKnown RBP12.08□□□□□ -0.48
USP40-208ENST00000450966 SLC38A9Q8NBW4 561 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 OR10P1Q8NGE3 313 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 NDUFAF3Q9BU61 184 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 A4GALTQ9NPC4 353 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 NAT8BQ9UHF3 227 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 TNFRSF10CO14798 259 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 GSTZ1O43708 216 aaPredicted RBP12.08□□□□□ -0.48
USP40-208ENST00000450966 TIMP2P16035 220 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 GAMTQ14353 236 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 OR2L13Q8N349 312 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 ADGRG7Q96K78 797 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 ANGPTL4Q9BY76 406 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 MARCH5Q9NX47 278 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 MMP17Q9ULZ9 603 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 A0A0B4J293 547 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 CTDSPLO15194 276 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 FRS3O43559 492 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 HAND1O96004 215 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 TNFSF4P23510 183 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 CDRT4Q8N9R6 151 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 OR5K2Q8NHB8 316 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 ACY3Q96HD9 319 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 ANKRD36CQ5JPF3 1778 aa12.08□□□□□ -0.48
USP40-208ENST00000450966 FCN1O00602 326 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 COX5AP20674 150 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 FAM3BP58499 235 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 ZNF85Q03923 595 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 PLAC9Q5JTB6 97 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 TMEM184AQ6ZMB5 413 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 TMEM251Q8N6I4 163 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 SHISA4Q96DD7 197 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 PLEKHB1Q9UF11 243 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 BOKQ9UMX3 212 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 LOC102723971A0A1B0GUV8 181 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 FXYD1O00168 92 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 GCH1P30793 250 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 CCR5P51681 352 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 ZNF133P52736 654 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 TMEM267Q0VDI3 215 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 NUDT10Q8NFP7 164 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 OR9A4Q8NGU2 314 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 PLEKHF2Q9H8W4 249 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 PTRH2Q9Y3E5 179 aaKnown RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 DIRC3C9JPN6 131 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 CTSCP53634 463 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 DHODHQ02127 395 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 NHLRC3Q5JS37 347 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 ZNF684Q5T5D7 378 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 BPIFA4PQ86YQ2 179 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 OR1P1Q8NH06 330 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 ZNRF4Q8WWF5 429 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 FOXN4Q96NZ1 517 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 ADAT1Q9BUB4 502 aaKnown RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 WDR76Q9H967 626 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 IL17CQ9P0M4 197 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 MCTS1Q9ULC4 181 aaKnown RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 SSX1Q16384 188 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 TMEM52BQ4KMG9 183 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 TTC32Q5I0X7 151 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 ADAMTSL4Q6UY14 1074 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 SPEM1Q8N4L4 309 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 TTC9BQ8N6N2 239 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 TEX37Q96LM6 180 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 SLC46A1Q96NT5 459 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 NKX3-1Q99801 234 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 HAPLN2Q9GZV7 340 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 ZNF443Q9Y2A4 671 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 TGIF2-C20orf24A0A0A6YYL0 155 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 HPP00738 406 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 BLVRBP30043 206 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 APLNRP35414 380 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 BTNL3Q6UXE8 466 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 BCL2L2Q92843 193 aaPredicted RBP12.07□□□□□ -0.48
USP40-208ENST00000450966 EGLN2Q96KS0 407 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 MTCH1Q9NZJ7 389 aa12.07□□□□□ -0.48
USP40-208ENST00000450966 SLC6A11P48066 632 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 HINT1P49773 126 aaPredicted RBP12.06□□□□□ -0.48
USP40-208ENST00000450966 TNFRSF9Q07011 255 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 CATR1Q13166 79 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 IHHQ14623 411 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 DEFB110Q30KQ9 67 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 STRCQ7RTU9 1775 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 ANTXRLA6NF34 631 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 FABP2P12104 132 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 GLRX5Q86SX6 157 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 SMIM19Q96E16 107 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 DMRT3Q9NQL9 472 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 DOK5Q9P104 306 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 USP54Q70EL1 1684 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 MASP2O00187 686 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 SEMA7AO75326 666 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 HOXD9P28356 352 aaPredicted RBP12.06□□□□□ -0.48
USP40-208ENST00000450966 S100A7P31151 101 aa12.06□□□□□ -0.48
USP40-208ENST00000450966 KLF3P57682 345 aaPredicted RBP12.06□□□□□ -0.48
USP40-208ENST00000450966 NAAAQ02083 359 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms