RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 GMPPBQ9Y5P6 360 aa9.7□□□□□ -0.86
COL28A1-203ENST00000435823 CACNG2Q9Y698 323 aa9.7□□□□□ -0.86
COL28A1-203ENST00000435823 CSPG4Q6UVK1 2322 aa9.7□□□□□ -0.86
COL28A1-203ENST00000435823 LOC100289279A0A1B0GTE1 492 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ISPDA4D126 451 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 C5orf63A6NC05 138 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 SNTNA6NMZ2 147 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ANKRD30BLA7E2S9 258 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 A8MV72 311 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-203ENST00000435823 INAFM1C9JVW0 142 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 F5H5P2 479 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 H0YL77 283 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 IFNL4K9M1U5 179 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 MLNRO43193 412 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ABCA1O95477 2261 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 SBK2P0C263 348 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 HIVEP2P31629 2446 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 RIDAP52758 137 aaKnown RBP9.69□□□□□ -0.86
COL28A1-203ENST00000435823 CXCR4P61073 352 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ROM1Q03395 351 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 MZT1Q08AG7 82 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 OR8G1Q15617 311 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 SNCBQ16143 134 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ZNF829Q3KNS6 432 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-203ENST00000435823 C6orf52Q5T4I8 152 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 AVPI1Q5T686 147 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 MEDAGQ5VYS4 303 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ZNF322Q6U7Q0 402 aaPredicted RBP9.69□□□□□ -0.86
COL28A1-203ENST00000435823 PRSS45Q7RTY3 260 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ZNF679Q8IYX0 411 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 OR56B2PQ8NGI1 322 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 OR51G2Q8NGK0 314 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 CLDND2Q8NHS1 167 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 SGK3Q96BR1 496 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 MBOAT4Q96T53 435 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 SLC29A1Q99808 456 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ADAT1Q9BUB4 502 aaKnown RBP9.69□□□□□ -0.86
COL28A1-203ENST00000435823 TTTY10Q9BZA0 68 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 TANC2Q9HCD6 1990 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 TMEM106BQ9NUM4 274 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 ZNF391Q9UJN7 358 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 KCNS2Q9ULS6 477 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.69□□□□□ -0.86
COL28A1-203ENST00000435823 COPS3Q9UNS2 423 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 WIPI2Q9Y4P8 454 aa9.69□□□□□ -0.86
COL28A1-203ENST00000435823 TLN2Q9Y4G6 2542 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 YLPM1P49750 1951 aaKnown RBP9.68□□□□□ -0.86
COL28A1-203ENST00000435823 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-203ENST00000435823 hCG_38984A0A1B0GV85 526 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 TMEM269A0A1B0GVZ9 245 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 A0A1B0GWJ7 208 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 FAM181BA6NEQ2 426 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 ACOD1A6NK06 481 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 PSMD9O00233 223 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 MPZL2O60487 215 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 GMDSO60547 372 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 HLA-DPB1P04440 258 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 OR2T7P0C7T2 308 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 CA6P23280 308 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 ANOS1P23352 680 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 IL2RGP31785 369 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 DCTDP32321 178 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 SNRPGP62308 76 aaKnown RBP9.68□□□□□ -0.86
COL28A1-203ENST00000435823 FAM3AP98173 230 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 SPRNQ5BIV9 151 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 FAM166AQ6J272 317 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 KLBQ86Z14 1044 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 FTMTQ8N4E7 242 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 CELF2-AS1Q8N7Q2 184 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 LINC01356Q8N9X3 169 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 SPERTQ8NA61 448 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 CSNK2A3Q8NEV1 391 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 OR2T27Q8NH04 317 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 RAB39BQ96DA2 213 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 MSI2Q96DH6 328 aaKnown RBP9.68□□□□□ -0.86
COL28A1-203ENST00000435823 RDH12Q96NR8 316 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 GAL3ST1Q99999 423 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 GCM1Q9NP62 436 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 C8orf4Q9NR00 106 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 NPTNQ9Y639 398 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 DYSFO75923 2080 aa9.68□□□□□ -0.86
COL28A1-203ENST00000435823 NSD1Q96L73 2696 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-203ENST00000435823 SETD2Q9BYW2 2564 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-203ENST00000435823 LRRC30A6NM36 301 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 ANKRD65E5RJM6 399 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 WNT9BO14905 357 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 TGFAP01135 160 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 KRT8P05787 483 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 IRF2P14316 349 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 ANPEPP15144 967 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 GNALP38405 381 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 CD200P41217 278 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 GATA4P43694 442 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 GSK3AP49840 483 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 MMP16P51512 607 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 CDH15P55291 814 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 EGR3Q06889 387 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 RCN1Q15293 331 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 OCLNQ16625 522 aa9.67□□□□□ -0.86
COL28A1-203ENST00000435823 SLC25A30Q5SVS4 291 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms