RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 F2RP25116 425 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 HLA-DMAP28067 261 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 EVI2BP34910 448 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 TGM4P49221 684 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 RPL14P50914 215 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNF121P58317 390 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 VBP1P61758 197 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 GNB2P62879 340 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 REEP5Q00765 189 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 HMGCS1Q01581 520 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 DR1Q01658 176 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 SEMG2Q02383 582 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ACVR1Q04771 509 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 C2orf54Q08AI8 447 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 DYNC1I2Q13409 638 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNF726P1Q15940 193 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 LRRC34Q8IZ02 419 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 OR4F15Q8NGB8 312 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 RNF133Q8WVZ7 376 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNF184Q99676 751 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNF442Q9H7R0 627 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ISYNA1Q9NPH2 558 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM9BQ9NQ34 198 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 IFT46Q9NQC8 304 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 PLEKHJ1Q9NW61 149 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 SLC25A37Q9NYZ2 338 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 CYB5R1Q9UHQ9 305 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 PRELID1Q9Y255 219 aa3.8□□□□□ -1.8
CCDC88A-206ENST00000430086 ERVV-1B6SEH8 477 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 ANKRD65E5RJM6 399 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNF593O00488 134 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 HCRTR1O43613 425 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 ADAP1O75689 374 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 UTS2O95399 124 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RAB36O95755 333 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 AIFM1O95831 613 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 ORM1P02763 201 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 HPNP05981 417 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 HOXC4P09017 264 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 OR5AL1P0C617 328 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 OR8U8P0C7N1 319 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 LIPCP11150 499 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 MLNP12872 115 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 IGLL1P15814 213 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 TCP1P17987 556 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 GGT1P19440 569 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 LOXP28300 417 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 KLK7P49862 253 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 FABP6P51161 128 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RPL18AQ02543 176 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 TGFBR3Q03167 851 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 PRKCDQ05655 676 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RAB31Q13636 194 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 LRRC36Q1X8D7 754 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 COX19Q49B96 90 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 PIGGQ5H8A4 983 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 C1orf146Q5VVC0 180 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 Q6ZVH6 145 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM179BQ7Z7N9 219 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 TGIF2LYQ8IUE0 185 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 PGAM4Q8N0Y7 254 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 PNKDQ8N490 385 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 OR51S1Q8NGJ8 323 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 SFXN5Q8TD22 340 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RNASEH2CQ8TDP1 164 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 ADTRPQ96IZ2 230 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNF681Q96N22 645 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 LINC00167Q96N53 147 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 VAT1Q99536 393 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RNF126Q9BV68 326 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 CHRNA10Q9GZZ6 450 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 TRIM45Q9H8W5 580 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 PLGRKTQ9HBL7 147 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 SPANXB1Q9NS25 103 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RPS6KB2Q9UBS0 482 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RAB23Q9ULC3 237 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 AP3M1Q9Y2T2 418 aa3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 RAI1Q7Z5J4 1906 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-206ENST00000430086 IGHV7-81A0A0B4J1V7 117 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 TRAV39A0A0B4J263 110 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 A0A0G2JLM5 398 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 ZNF726A6NNF4 738 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 C12orf77C9JDV5 145 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 SRP72O76094 671 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 PVALBP20472 110 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 USF1P22415 310 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 GNRHRP30968 328 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 RPA3P35244 121 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 VDAC2P45880 294 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 VSX2P58304 361 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 RHOAP61586 193 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 NUTF2P61970 127 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 RPL10AP62906 217 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 KDSRQ06136 332 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 BNIP2Q12982 314 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 PRPSAP1Q14558 356 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 QPRTQ15274 297 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 KRTAP13-3Q3SY46 172 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 PDZD11Q5EBL8 140 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 FAM27D1Q5T7N8 215 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms