RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PIGPP57054 158 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 PDGFBP01127 241 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-206ENST00000429895 CRYABP02511 175 aaKnown RBP13.91□□□□□ -0.18
PTPRF-206ENST00000429895 SLC17A1Q14916 467 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 OSR2Q8N2R0 312 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 LFNGQ8NES3 379 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 MARCH1Q8TCQ1 289 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 GALMQ96C23 342 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 UMAD1C9J7I0 102 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 H7BYZ3 331 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 SLC6A12P48065 614 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 DSCR4P56555 118 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-206ENST00000429895 TIGITQ495A1 244 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 CD276Q5ZPR3 534 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 GUSBP11Q6P575 273 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 C2CD4CQ8TF44 421 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 ISG20L2Q9H9L3 353 aaKnown RBP13.91□□□□□ -0.18
PTPRF-206ENST00000429895 PDFQ9HBH1 243 aa13.91□□□□□ -0.18
PTPRF-206ENST00000429895 DHHO43323 396 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 RNF151Q2KHN1 245 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 NOXO1Q8NFA2 376 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 CA5BP1Q8WTZ4 195 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 A4GNTQ9UNA3 340 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 XKRY2A2RUG3 117 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 ZNF787Q6DD87 383 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 GLCCI1Q86VQ1 547 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 M1APQ8TC57 530 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 TMED6Q8WW62 240 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 SCPEP1Q9HB40 452 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 ZNF71Q9NQZ8 489 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-206ENST00000429895 NDUFB11Q9NX14 153 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 MYH9P35579 1960 aaKnown RBP13.9□□□□□ -0.18
PTPRF-206ENST00000429895 TCRBV5S1A1TA0A578 114 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 DEFB108AA8MXU0 73 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 SLC25A4P12235 298 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 CTU2Q2VPK5 515 aaKnown RBP13.9□□□□□ -0.18
PTPRF-206ENST00000429895 H3F3CQ6NXT2 135 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 LHX4Q969G2 390 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 ADAT1Q9BUB4 502 aaKnown RBP13.9□□□□□ -0.18
PTPRF-206ENST00000429895 ZNF727A8MUV8 499 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 ETHE1O95571 254 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 RAF1P04049 648 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 AKR1C3P42330 323 aa13.9□□□□□ -0.18
PTPRF-206ENST00000429895 OR5H8P0DN80 308 aa13.9□□□□□ -0.19
PTPRF-206ENST00000429895 ASCL1P50553 236 aa13.9□□□□□ -0.19
PTPRF-206ENST00000429895 CDH26Q8IXH8 852 aa13.9□□□□□ -0.19
PTPRF-206ENST00000429895 OR10Z1Q8NGY1 313 aa13.9□□□□□ -0.19
PTPRF-206ENST00000429895 SLC25A37Q9NYZ2 338 aa13.9□□□□□ -0.19
PTPRF-206ENST00000429895 METTL12A8MUP2 240 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 NUDT19A8MXV4 375 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 FAM122BQ7Z309 247 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 ZNF354AO60765 605 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-206ENST00000429895 AQP8O94778 261 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 BMP5P22003 454 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 S100A4P26447 101 aaKnown RBP13.89□□□□□ -0.19
PTPRF-206ENST00000429895 ARRB2P32121 409 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 Q1RN00 199 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 OR13D1Q8NGV5 346 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 JAM3Q9BX67 310 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 HES4Q9HCC6 221 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 POMT2Q9UKY4 750 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 ANKUB1A6NFN9 424 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 RPL12P30050 165 aaKnown RBP13.89□□□□□ -0.19
PTPRF-206ENST00000429895 TGFBR1P36897 503 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 MEOX1P50221 254 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 STAC2Q6ZMT1 411 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 SPACA9Q96E40 222 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-206ENST00000429895 MVB12AQ96EY5 273 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 MISP3Q96FF7 219 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 SMOC1Q9H4F8 434 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 H3BMH7 237 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 GPR31O00270 319 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 GABRG2P18507 467 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 ZNF628Q5EBL2 1059 aa13.89□□□□□ -0.19
PTPRF-206ENST00000429895 RCL1Q9Y2P8 373 aaKnown RBP13.89□□□□□ -0.19
PTPRF-206ENST00000429895 GPX5O75715 221 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 CD3DP04234 171 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 MGMTP16455 207 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 RAB1AP62820 205 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 GSG1Q2KHT4 349 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 LYPD8Q6UX82 237 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 KMT5CQ86Y97 462 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 FOXB1Q99853 325 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 ZNF416Q9BWM5 594 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 COL16A1Q07092 1604 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-206ENST00000429895 A0A0A6YYJ9 748 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 RXFP4Q8TDU9 374 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 CTDSP1Q9GZU7 261 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 TSPAN12O95859 305 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 KIRREL2Q6UWL6 708 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 SLC24A4Q8NFF2 622 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 GPX8Q8TED1 209 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 GNPNAT1Q96EK6 184 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-206ENST00000429895 FBXL4Q9UKA2 621 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 UBE2L5PA0A1B0GUS4 154 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 H3BP45 60 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 H3F3AP84243 136 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 ZBTB25P24278 435 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 CD80P33681 288 aa13.88□□□□□ -0.19
PTPRF-206ENST00000429895 MZB1Q8WU39 189 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms