RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 ZDHHC21Q8IVQ6 265 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 PDZD9Q8IXQ8 264 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 OR2T4Q8NH00 348 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 GATAD2BQ8WXI9 593 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 ST8SIA4Q92187 359 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 LHX4Q969G2 390 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 CHIAQ9BZP6 476 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 SLITRK2Q9H156 845 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 RASSF4Q9H2L5 321 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 GORASP2Q9H8Y8 452 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 BEX1Q9HBH7 125 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 CDH10Q9Y6N8 788 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 COMMD3-BMI1R4GMX3 469 aa12.05□□□□□ -0.48
SDC1-204ENST00000429035 ZNF879B4DU55 563 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 IDH3BO43837 385 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 GYPBP06028 91 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 MELTFP08582 738 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 MXRA7P84157 204 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 GFOD2Q3B7J2 385 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 DRAM2Q6UX65 266 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 PNLDC1Q8NA58 520 aaKnown RBP12.04□□□□□ -0.48
SDC1-204ENST00000429035 OR6K6Q8NGW6 343 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 OR8S1Q8NH09 359 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 WFDC12Q8WWY7 111 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 WDFY2Q96P53 400 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 CCT8L2Q96SF2 557 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 TBX15Q96SF7 602 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 MYLK2Q9H1R3 596 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 NOX4Q9NPH5 578 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 TRIM36Q9NQ86 728 aa12.04□□□□□ -0.48
SDC1-204ENST00000429035 BHLHE40O14503 412 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 GMDSO60547 372 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 ANXA2P07355 339 aaKnown RBP12.03□□□□□ -0.48
SDC1-204ENST00000429035 MZT1Q08AG7 82 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 PDLIM3Q53GG5 364 aaPredicted RBP12.03□□□□□ -0.48
SDC1-204ENST00000429035 SAMD4BQ5PRF9 694 aaKnown RBP12.03□□□□□ -0.48
SDC1-204ENST00000429035 OLFML2AQ68BL7 652 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 RPL13AP3Q6NVV1 102 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 Q6YL49 198 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 PGAM4Q8N0Y7 254 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 SLC37A3Q8NCC5 494 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 ZNRF4Q8WWF5 429 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 SLAMF6Q96DU3 332 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 MED4Q9NPJ6 270 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 C1RLQ9NZP8 487 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 MRPL15Q9P015 296 aaKnown RBP12.03□□□□□ -0.48
SDC1-204ENST00000429035 ONECUT1Q9UBC0 465 aa12.03□□□□□ -0.48
SDC1-204ENST00000429035 MEGF8Q7Z7M0 2845 aa12.02□□□□□ -0.48
SDC1-204ENST00000429035 CENPVL3A0A0U1RRI6 287 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 A0A1B0GUS0 222 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 ANKRD30BLA7E2S9 258 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 ZNF878C9JN71 531 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 TNFRSF11BO00300 401 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 XRCC2O43543 280 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 SOX14O95416 240 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 HSD17B1P14061 328 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 MMP9P14780 707 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 HSD11B1P28845 292 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 CX3CR1P49238 355 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 ENTPD1P49961 510 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 BPIFB3P59826 476 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 GMFBP60983 142 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 ARF6P62330 175 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 CRMP1Q14194 572 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 TIGD6Q17RP2 521 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 ZNF362Q5T0B9 420 aaPredicted RBP12.02□□□□□ -0.49
SDC1-204ENST00000429035 BTN2A1Q7KYR7 527 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 FAM90A1Q86YD7 464 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 GCSAMQ8N6F7 178 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 OR8D4Q8NGM9 314 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 LRRC29Q8WV35 223 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 FAM71F1Q96KD3 344 aaPredicted RBP12.02□□□□□ -0.49
SDC1-204ENST00000429035 CDRT15Q96T59 188 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 KCNJ15Q99712 375 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 BTBD10Q9BSF8 475 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 TSSK6Q9BXA6 273 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 OPA3Q9H6K4 179 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 ACOXLQ9NUZ1 547 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 ARMC1Q9NVT9 282 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 C14orf119Q9NWQ9 140 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 DNAJC27Q9NZQ0 273 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 MMP24Q9Y5R2 645 aa12.02□□□□□ -0.49
SDC1-204ENST00000429035 IGHV1-69DA0A0B4J2H0 117 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 A0A1B0GW55 424 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 DVL1O14640 695 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 TNFRSF13BO14836 293 aaPredicted RBP12.01□□□□□ -0.49
SDC1-204ENST00000429035 CCNB2O95067 398 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 IGHV1-69P01742 117 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 LIPFP07098 398 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 DUX4L2P0CJ85 424 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 DUX4L3P0CJ86 424 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 DUX4L4P0CJ87 422 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 DUX4L5P0CJ88 424 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 DUX4L6P0CJ89 424 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 DUX4L7P0CJ90 424 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 CLUP10909 449 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 FMO3P31513 532 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 CSNK2BP67870 215 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 RELBQ01201 579 aa12.01□□□□□ -0.49
SDC1-204ENST00000429035 PPP1R8Q12972 351 aaKnown RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms