RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SELENOPP49908 381 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 MRPL49Q13405 166 aaKnown RBP13.08□□□□□ -0.32
USP4-203ENST00000415188 STEAP1BQ6NZ63 245 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 BIVMQ86UB2 503 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 OR8H1Q8NGG4 311 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 OR2AJ1Q8NGZ0 328 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 CCDC107Q8WV48 283 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 PSMG3-AS1Q96PY0 264 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 OR2A7Q96R45 310 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 SLC25A21Q9BQT8 299 aaPredicted RBP13.08□□□□□ -0.32
USP4-203ENST00000415188 PBOV1Q9GZY1 135 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 CLEC4MQ9H2X3 399 aaPredicted RBP13.08□□□□□ -0.32
USP4-203ENST00000415188 MYOZ1Q9NP98 299 aaPredicted RBP13.08□□□□□ -0.32
USP4-203ENST00000415188 ZNF69Q9UC07 566 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 GDF2Q9UK05 429 aaPredicted RBP13.08□□□□□ -0.32
USP4-203ENST00000415188 HS3ST3B1Q9Y662 390 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 CHCHD2Q9Y6H1 151 aaPredicted RBP13.08□□□□□ -0.32
USP4-203ENST00000415188 IGHV1-45A0A0A0MS14 117 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 A0A1W2PPL8 197 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 OR2M5A3KFT3 312 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 SHISA8B8ZZ34 492 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 SYT7O43581 403 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 IFNA7P01567 189 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 TTRP02766 147 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 ANXA7P20073 488 aaKnown RBP13.07□□□□□ -0.32
USP4-203ENST00000415188 SOX8P57073 446 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 SPOCK1Q08629 439 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 AIMP2Q13155 320 aaKnown RBP13.07□□□□□ -0.32
USP4-203ENST00000415188 ZMYND11Q15326 602 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 MPPED2Q15777 294 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 HIST3H3Q16695 136 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 ZNF529Q6P280 563 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 TEX261Q6UWH6 196 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 WDFY1Q8IWB7 410 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 GABRG1Q8N1C3 465 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 SLC22A24Q8N4F4 322 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 CISD2Q8N5K1 135 aaKnown RBP13.07□□□□□ -0.32
USP4-203ENST00000415188 JAGN1Q8N5M9 183 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 WDSUB1Q8N9V3 476 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 UXS1Q8NBZ7 420 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 OR1M1Q8NGA1 313 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 FAM46BQ96A09 425 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 NTNG2Q96CW9 530 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 SNRNP40Q96DI7 357 aaKnown RBP13.07□□□□□ -0.32
USP4-203ENST00000415188 SEH1LQ96EE3 360 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 IMMP1LQ96LU5 166 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 OR5B2Q96R09 309 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 TMEM138Q9NPI0 162 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 CGGBP1Q9UFW8 167 aaPredicted RBP13.07□□□□□ -0.32
USP4-203ENST00000415188 FBXL2Q9UKC9 423 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 POLR1DQ9Y2S0 133 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 RHBDD3Q9Y3P4 386 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 CSAG2Q9Y5P2 127 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 U3KQ87 197 aa13.07□□□□□ -0.32
USP4-203ENST00000415188 TUBAL3A6NHL2 446 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 ZNF726A6NNF4 738 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 RGS11O94810 467 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 AGFG2O95081 481 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 CD74P04233 296 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 RNF224P0DH78 156 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 ZNF43P17038 809 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 PMPCAQ10713 525 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 MEF2DQ14814 521 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 EIF2S3LQ2VIR3 472 aaKnown RBP13.06□□□□□ -0.32
USP4-203ENST00000415188 LGALSLQ3ZCW2 172 aaPredicted RBP13.06□□□□□ -0.32
USP4-203ENST00000415188 FAAP20Q6NZ36 180 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 CORO6Q6QEF8 472 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 IGFL3Q6UXB1 125 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 ZNF813Q6ZN06 617 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 OR51A2Q8NGJ7 313 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 OR5D14Q8NGL3 314 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 OR10S1Q8NGN2 331 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 EMC6Q9BV81 110 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 ANGPTL4Q9BY76 406 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 HEXA-AS1Q9H8Q6 139 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 PIPOXQ9P0Z9 390 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 EIF3KQ9UBQ5 218 aaKnown RBP13.06□□□□□ -0.32
USP4-203ENST00000415188 LHFPL6Q9Y693 200 aa13.06□□□□□ -0.32
USP4-203ENST00000415188 SPTAN1Q13813 2472 aaKnown RBP13.06□□□□□ -0.32
USP4-203ENST00000415188 UTP20O75691 2785 aaKnown RBP13.05□□□□□ -0.32
USP4-203ENST00000415188 NBPF19A0A087WUL8 3843 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 G3V3Q6 166 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 EIF1BO60739 113 aaKnown RBP13.05□□□□□ -0.32
USP4-203ENST00000415188 NOS1APO75052 506 aaPredicted RBP13.05□□□□□ -0.32
USP4-203ENST00000415188 SLC22A5O76082 557 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 VAMP5O95183 116 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 RAB3DO95716 219 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 VSIG10L2P0DP72 767 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 COX6A1P12074 109 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 ZNF17P17021 662 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 RAB3AP20336 220 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 MPZP25189 248 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 ZNF81P51508 661 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 LSM6P62312 80 aaKnown RBP13.05□□□□□ -0.32
USP4-203ENST00000415188 GRB2P62993 217 aaKnown RBP13.05□□□□□ -0.32
USP4-203ENST00000415188 GUCA2AQ02747 115 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 Q0VFX4 171 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 FAM189A2Q15884 450 aa13.05□□□□□ -0.32
USP4-203ENST00000415188 THOC7Q6I9Y2 204 aaKnown RBP13.05□□□□□ -0.32
USP4-203ENST00000415188 TMPPEQ6ZT21 453 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms