RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 NOX4Q9NPH5 578 aa13.41□□□□□ -0.26
CUX2-202ENST00000397643 MIOXQ9UGB7 285 aa13.41□□□□□ -0.26
CUX2-202ENST00000397643 STARD10Q9Y365 291 aa13.41□□□□□ -0.26
CUX2-202ENST00000397643 XKRYO14609 159 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 ARPC3O15145 178 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 FSTL3O95633 263 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 TXNDC12O95881 172 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 CRYBA1P05813 215 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 MSR1P21757 451 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 TUBG1P23258 451 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 NOS3P29474 1203 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 SDHAP31040 664 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 PROK1P58294 105 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 FGF12P61328 243 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 GINS1Q14691 196 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 ZNF404Q494X3 552 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 ARL9Q6T311 187 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 OR10AD1Q8NGE0 317 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 MEGF10Q96KG7 1140 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 RDH12Q96NR8 316 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 CDADC1Q9BWV3 514 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 GABARAPL3Q9BY60 117 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 POLE4Q9NR33 117 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 TUBG2Q9NRH3 451 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 ADAM18Q9Y3Q7 739 aa13.4□□□□□ -0.26
CUX2-202ENST00000397643 TEX13CA0A0J9YWL9 993 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 A0A1W2PPL8 197 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 SLC22A31A6NKX4 558 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 C12orf71A8MTZ7 269 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 C22orf46C9J442 243 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 IFNL4K9M1U5 179 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 BHLHE40O14503 412 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 CLPXO76031 633 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 HMGN1P05114 100 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 GRK5P34947 590 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 HTR5AP47898 357 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 PITPNBP48739 271 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 CDK5Q00535 292 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 FAM201AQ5SY85 155 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 VASH1Q7L8A9 365 aaPredicted RBP13.39□□□□□ -0.27
CUX2-202ENST00000397643 FAM122BQ7Z309 247 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 OR5AS1Q8N127 324 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 LNX2Q8N448 690 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 OR4Q3Q8NH05 313 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 LINC01006Q8NI28 216 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 NRG4Q8WWG1 115 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 UBE2FQ969M7 185 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 PLEKHA8Q96JA3 519 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 Q96M85 177 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 RBP7Q96R05 134 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 PRRG3Q9BZD7 231 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 RASSF4Q9H2L5 321 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 SLC25A19Q9HC21 320 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 EMC7Q9NPA0 242 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 SMPD3Q9NY59 655 aaPredicted RBP13.39□□□□□ -0.27
CUX2-202ENST00000397643 RNF114Q9Y508 228 aa13.39□□□□□ -0.27
CUX2-202ENST00000397643 KMT2CQ8NEZ4 4911 aaKnown RBP13.38□□□□□ -0.27
CUX2-202ENST00000397643 TNFRSF13BO14836 293 aaPredicted RBP13.38□□□□□ -0.27
CUX2-202ENST00000397643 MLNRO43193 412 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 DOK2O60496 412 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 IFNGP01579 166 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 SFTPBP07988 381 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 PMELP40967 661 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 BPIFB3P59826 476 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 RPL15P61313 204 aaKnown RBP13.38□□□□□ -0.27
CUX2-202ENST00000397643 KRR1Q13601 381 aaKnown RBP13.38□□□□□ -0.27
CUX2-202ENST00000397643 PDCD1Q15116 288 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 PTGES3Q15185 160 aaKnown RBP13.38□□□□□ -0.27
CUX2-202ENST00000397643 TAF9Q16594 264 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 ZNF181Q2M3W8 571 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 ZIK1Q3SY52 487 aaPredicted RBP13.38□□□□□ -0.27
CUX2-202ENST00000397643 SLC35F1Q5T1Q4 408 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 GPR157Q5UAW9 335 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 WDR25Q64LD2 544 aaPredicted RBP13.38□□□□□ -0.27
CUX2-202ENST00000397643 ZNF841Q6ZN19 808 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 ADCK1Q86TW2 530 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 IQCF1Q8N6M8 205 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 OR8B3Q8NGG8 313 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 FNDC8Q8TC99 324 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 SLC7A6Q92536 515 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 RASD2Q96D21 266 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 OR8B2Q96RD0 313 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 TOR3AQ9H497 397 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 POMT1Q9Y6A1 747 aa13.38□□□□□ -0.27
CUX2-202ENST00000397643 RIIAD1A6NNX1 92 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 ZAR1LA6NP61 321 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 H0YL77 283 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 PHYHO14832 338 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 AHCYL1O43865 530 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 MMP9P14780 707 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 RAC2P15153 192 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 POLR2IP36954 125 aaKnown RBP13.37□□□□□ -0.27
CUX2-202ENST00000397643 CFHR2P36980 270 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 HLXQ14774 488 aaPredicted RBP13.37□□□□□ -0.27
CUX2-202ENST00000397643 FBLN7Q53RD9 439 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 MESTQ5EB52 335 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 TMEM236Q5W0B7 351 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 LYPD2Q6UXB3 125 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 MOGAT3Q86VF5 341 aa13.37□□□□□ -0.27
CUX2-202ENST00000397643 ZNF555Q8NEP9 628 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms