RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OR2T27Q8NH04 317 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 TTTY10Q9BZA0 68 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 SLC22A4Q9H015 551 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 ZNF319Q9P2F9 582 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 NOP16Q9Y3C1 178 aaKnown RBP18.4■□□□□ 0.54
CLN3-207ENST00000395653 ACOD1A6NK06 481 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 DDOSTP39656 456 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 FAM3AP98173 230 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 KRTAP1-1Q07627 177 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 OGFRL1Q5TC84 451 aaPredicted RBP18.4■□□□□ 0.54
CLN3-207ENST00000395653 OR56B2PQ8NGI1 322 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 RHOXF1Q8NHV9 184 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 OR2V2Q96R30 315 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 FAM206AQ9NX38 181 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 MRPL15Q9P015 296 aaKnown RBP18.4■□□□□ 0.54
CLN3-207ENST00000395653 ZNF391Q9UJN7 358 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 CACNG2Q9Y698 323 aa18.4■□□□□ 0.54
CLN3-207ENST00000395653 hCG_38984A0A1B0GV85 526 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 CLDN25C9JDP6 229 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 H0YL77 283 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 PPIHO43447 177 aaKnown RBP18.39■□□□□ 0.53
CLN3-207ENST00000395653 APOL3O95236 402 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 MMP16P51512 607 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 CHN2P52757 468 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 SLC3A1Q07837 685 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 ZNF829Q3KNS6 432 aaPredicted RBP18.39■□□□□ 0.53
CLN3-207ENST00000395653 ITLN1Q8WWA0 313 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 CCL17Q92583 94 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 Q96MT0 163 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 APOL4Q9BPW4 351 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 CSPG4Q6UVK1 2322 aa18.39■□□□□ 0.53
CLN3-207ENST00000395653 TLN2Q9Y4G6 2542 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 TMEM269A0A1B0GVZ9 245 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 SRP9P49458 86 aaKnown RBP18.38■□□□□ 0.53
CLN3-207ENST00000395653 GFOD2Q3B7J2 385 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 OR10H4Q8NGA5 316 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 OR8B12Q8NGG6 310 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 RNFT2Q96EX2 444 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 MEGF10Q96KG7 1140 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 TBX5Q99593 518 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 AASSQ9UDR5 926 aa18.38■□□□□ 0.53
CLN3-207ENST00000395653 MRM2Q9UI43 246 aaKnown RBP18.38■□□□□ 0.53
CLN3-207ENST00000395653 A0A1W2PQL4 384 aaPredicted RBP18.37■□□□□ 0.53
CLN3-207ENST00000395653 HLA-DPB1P04440 258 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 CA6P23280 308 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 ACTC1P68032 377 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 ACTA1P68133 377 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 TTC23Q5W5X9 447 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 SSX6Q7RTT6 188 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 CELF2-AS1Q8N7Q2 184 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 MOB1AQ9H8S9 216 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 TANC2Q9HCD6 1990 aa18.37■□□□□ 0.53
CLN3-207ENST00000395653 NSD1Q96L73 2696 aaPredicted RBP18.37■□□□□ 0.53
CLN3-207ENST00000395653 A0A0U1RQV5 110 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 F5H5P2 479 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 CD5LO43866 347 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 GMDSO60547 372 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 SRSF10O75494 262 aaKnown RBP18.36■□□□□ 0.53
CLN3-207ENST00000395653 KRT8P05787 483 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 GSK3AP49840 483 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 OR8B8Q15620 311 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 KLBQ86Z14 1044 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 HPS1Q92902 700 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 TIMD4Q96H15 378 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 ADAT1Q9BUB4 502 aaKnown RBP18.36■□□□□ 0.53
CLN3-207ENST00000395653 TREM2Q9NZC2 230 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 NUFIP1Q9UHK0 495 aaKnown RBP18.36■□□□□ 0.53
CLN3-207ENST00000395653 PPP1R3CQ9UQK1 317 aa18.36■□□□□ 0.53
CLN3-207ENST00000395653 LRP5LA4QPB2 252 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 ANKRD30BLA7E2S9 258 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 J3QRE1 110 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 IFNL4K9M1U5 179 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 MAGEB4O15481 346 aaPredicted RBP18.35■□□□□ 0.53
CLN3-207ENST00000395653 SULT1C4O75897 302 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 CD200P41217 278 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 GATA4P43694 442 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 GZMKP49863 264 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 ZNF91Q05481 1191 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 SLC34A1Q06495 639 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 OR8G1Q15617 311 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 SNCBQ16143 134 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 ZNF684Q5T5D7 378 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 Q71RC1 249 aaPredicted RBP18.35■□□□□ 0.53
CLN3-207ENST00000395653 FTMTQ8N4E7 242 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 SPERTQ8NA61 448 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 CSNK2A3Q8NEV1 391 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 APH1BQ8WW43 257 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 RAB1CQ92928 201 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 ITFG2Q969R8 447 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 PBOV1Q9GZY1 135 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 GCM1Q9NP62 436 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 TMEM106BQ9NUM4 274 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 NKX1-2Q9UD57 310 aaPredicted RBP18.35■□□□□ 0.53
CLN3-207ENST00000395653 EXOGQ9Y2C4 368 aaKnown RBP18.35■□□□□ 0.53
CLN3-207ENST00000395653 WIPI2Q9Y4P8 454 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 PCDHGB1Q9Y5G3 927 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 R4GMQ9 66 aa18.35■□□□□ 0.53
CLN3-207ENST00000395653 LOC110117498-PIK3R3F6TDL0 507 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 PNPP00491 289 aa18.34■□□□□ 0.53
CLN3-207ENST00000395653 IGHV4-31P0DP07 118 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms