RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FBXW9Q5XUX1 488 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 DNM1P46Q6ZS02 220 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 OR13C3Q8NGS6 347 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 GRPEL2Q8TAA5 225 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 EXTL1Q92935 676 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF837Q96EG3 531 aaPredicted RBP15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 HYLS1Q96M11 299 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 NUDT15Q9NV35 164 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 RAXQ9Y2V3 346 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 DCHS1Q96JQ0 3298 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 AKAP13Q12802 2813 aa15.95■□□□□ 0.14
CCDC88C-203ENST00000389856 A0A0A6YYJ9 748 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 LOC107986453A0A1B0GWG9 222 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 MEGF11A6BM72 1044 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 DOK2O60496 412 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 WDR1O75083 606 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 HOXD4P09016 255 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 FSTP19883 344 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 PTH2RP49190 550 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 SRP9P49458 86 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 PRKXP51817 358 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 ARF1P84077 181 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 RIPPLY1Q0D2K3 151 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 ACSF3Q4G176 576 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 CCDC92Q53HC0 331 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 OLFML2AQ68BL7 652 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 DTX3Q8N9I9 347 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 OR1F12Q8NHA8 337 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 NANOS1Q8WY41 292 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 FBXO17Q96EF6 278 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 SLC5A6Q9Y289 635 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 PHF3Q92576 2039 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 OR6C6A6NF89 314 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 FIGNL2A6NMB9 653 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 SYT7O43581 403 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 IGHV3-9P01782 118 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 CD37P11049 281 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 GIFP27352 417 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 MPGP29372 298 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF121P58317 390 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 CXADRP78310 365 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 GALK2Q01415 458 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 TGFBR3Q03167 851 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 SSBP1Q04837 148 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 NSUN5P2Q63ZY6 315 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 DRAM2Q6UX65 266 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 FAM214BQ7L5A3 538 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 NUFIP2Q7Z417 695 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 OR52H1Q8NGJ2 320 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 PGAM5Q96HS1 289 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 TMEM246Q9BRR3 403 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 OR51J1Q9H342 316 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 TAS2R8Q9NYW2 309 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 ING4Q9UNL4 249 aa15.94■□□□□ 0.14
CCDC88C-203ENST00000389856 A0A087WV48 116 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 XRCC3O43542 346 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF32P17041 273 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 ARR3P36575 388 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 SLC6A9P48067 706 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 ZC3HAV1Q7Z2W4 902 aaKnown RBP15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 COMMD2Q86X83 199 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 OR5M9Q8NGP3 310 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 OR6K3Q8NGY3 331 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 ASB5Q8WWX0 329 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 OR2H1Q9GZK4 316 aa15.93■□□□□ 0.14
CCDC88C-203ENST00000389856 URB1O60287 2271 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 ANKRD20A5PA0PJZ0 165 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 M0R135 149 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 P2RY10O00398 339 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 SLC17A2O00624 439 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 TTRP02766 147 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 CRHP06850 196 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 ACSM4P0C7M7 580 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 OTX1P32242 354 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 FAUP35544 74 aaKnown RBP15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 RAB11BQ15907 218 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 GLT8D1Q68CQ7 371 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF585AQ6P3V2 769 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 ANKRD16Q6P6B7 361 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 PLXDC2Q6UX71 529 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 DOK3Q7L591 496 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 SKA3Q8IX90 412 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 OR52I2Q8NH67 350 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 ORAI1Q96D31 301 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF799Q96GE5 643 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 OR10A2Q9H208 303 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 RANBP3Q9H6Z4 567 aaPredicted RBP15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 C12orf49Q9H741 205 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 HRASLSQ9HDD0 168 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 DIABLOQ9NR28 239 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 ZNF391Q9UJN7 358 aa15.92■□□□□ 0.14
CCDC88C-203ENST00000389856 TRAV6A0A075B6T7 132 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 TRAV8-7A0A075B6U6 113 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 A0A0U1RQV5 110 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 F5H5K5 113 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 K7EM74 188 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 SYNGR3O43761 229 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 PEX14O75381 377 aa15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 PSMB1P20618 241 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-203ENST00000389856 CDK2P24941 298 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms