RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TAZQ16635 292 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 NCR3LG1Q68D85 454 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PTCRAQ6ISU1 281 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM184AQ6ZMB5 413 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM179BQ7Z7N9 219 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LYG2Q86SG7 212 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 NPAS3Q8IXF0 933 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM171Q8WVE6 324 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 PCED1BQ96HM7 432 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 RAX2Q96IS3 184 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 KCNK17Q96T54 332 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TEAD3Q99594 435 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 TUBD1Q9UJT1 453 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 LAMP3Q9UQV4 416 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 ABCA6Q8N139 1617 aa4.24□□□□□ -1.73
SCN1A-202ENST00000375405 AFDNP55196 1824 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TMSB15BA0A087X1C1 80 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SDCBPO00560 298 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LEFTY1O75610 366 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 STAG3L3P0CL85 134 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PVRP15151 417 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 FPR3P25089 353 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CDKN2DP55273 166 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR2B8PP59922 312 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ENDOGQ14249 297 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF266Q14584 549 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SYPL2Q5VXT5 272 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PLPPR4Q7Z2D5 763 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NUFIP2Q7Z417 695 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CALHM3Q86XJ0 350 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 BCORP1Q8N888 145 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR10P1Q8NGE3 313 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GPR148Q8TDV2 347 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 C12orf57Q99622 126 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 WDR83Q9BRX9 315 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 IL36RNQ9UBH0 155 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PPIL1Q9Y3C6 166 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CRB1P82279 1406 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 WNK2Q9Y3S1 2297 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LOC730098B7Z3J9 87 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ISLRO14498 428 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GNG7O60262 68 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GYPBP06028 91 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CKMT2P17540 419 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LGALS3P17931 250 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CDKN2AP42771 156 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SH3BP2P78314 561 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PTP4A2Q12974 167 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 IL11RAQ14626 422 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ANKRD39Q53RE8 183 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM177Q53S58 311 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 C5orf47Q569G3 176 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 FAM71E1Q6IPT2 247 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM102Q8N9M5 508 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CHST14Q8NCH0 376 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ADPRHL1Q8NDY3 354 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 LHFPL5Q8TAF8 219 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 STARD4Q96DR4 205 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SORT1Q99523 831 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 MAP1LC3CQ9BXW4 147 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM191AQ9H0A3 160 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ARRDC1-AS1Q9H2J1 176 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 AKIP1Q9NQ31 210 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 IER3IP1Q9Y5U9 82 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF541Q9H0D2 1346 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 DIRC3C9JPN6 131 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 DNAJB6O75190 326 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 F12P00748 615 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 H2AFB1P0C5Y9 115 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SRP9P49458 86 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CCR9P51686 369 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 CST6Q15828 149 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 HLA-BQ31612 363 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GTDC1Q4AE62 458 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ZBTB37Q5TC79 503 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 OR4C11Q6IEV9 310 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 Q6ZTK2 550 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 SLC38A9Q8NBW4 561 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM18Q96B42 140 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 MS4A10Q96PG2 267 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TSGA13Q96PP4 275 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PEBP4Q96S96 227 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 C1orf43Q9BWL3 253 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NECAP2Q9NVZ3 263 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TAS2R5Q9NYW4 299 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 ADAMTS5Q9UNA0 930 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 GPR55Q9Y2T6 319 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 COQ4Q9Y3A0 265 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 A0A0A6YYC8 382 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TCRBV7S3A2A0A539 114 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RBMY1BA6NDE4 496 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RBMY1EA6NEQ0 496 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 PROB1E7EW31 1015 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 I3L1I5 382 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 AQP8O94778 261 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RBMY1DP0C7P1 496 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RBMY1A1P0DJD3 496 aaKnown RBP4.23□□□□□ -1.73
SCN1A-202ENST00000375405 RBMY1CP0DJD4 496 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 TNFRSF4P43489 277 aa4.23□□□□□ -1.73
SCN1A-202ENST00000375405 NT5DC1Q5TFE4 455 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms