RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 LPAR5Q9H1C0 372 aa18.36■□□□□ 0.53
CCDC88B-203ENST00000359902 VAMP5O95183 116 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 GUCA1AP43080 201 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 OR3A4PP47883 348 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 ENDOGQ14249 297 aaKnown RBP18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 LY6G6FQ5SQ64 297 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 C17orf107Q6ZR85 190 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 RFPL4BQ6ZWI9 263 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 OR2W3Q7Z3T1 314 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 MRGPRFQ96AM1 343 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 NELFAQ9H3P2 528 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 VSIG4Q9Y279 399 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 KCNK7Q9Y2U2 307 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 NCOA6Q14686 2063 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 SDK2Q58EX2 2172 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 A0A0A6YYD4 124 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 NPIPA2E9PIF3 369 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 NPIPA3F8WFD2 350 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 SSX5O60225 188 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 S100A11P31949 105 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 HLXQ14774 488 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 FOXL2NBQ6ZUU3 175 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 TMEM123Q8N131 208 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 ARMC10Q8N2F6 343 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 OR9K2Q8NGE7 335 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 OR14K1Q8NGZ2 314 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 ASB13Q8WXK3 278 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 NAA11Q9BSU3 229 aaPredicted RBP18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 FBXO4Q9UKT5 387 aa18.35■□□□□ 0.53
CCDC88B-203ENST00000359902 FXYD6-FXYD2A0A087WZ82 144 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 A0A0J9YW62 118 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 CBR3O75828 277 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 CHRM2P08172 466 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 RAB14P61106 215 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 RIPPLY1Q0D2K3 151 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 DHRS2Q13268 280 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 NHLRC3Q5JS37 347 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 SFRP5Q5T4F7 317 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 TMUB2Q71RG4 321 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 DTWD2Q8NBA8 298 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 GJC3Q8NFK1 279 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 NABP1Q96AH0 204 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 FXYD6Q9H0Q3 95 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 DMDP11532 3685 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 IGKV1-9A0A0C4DH69 117 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 RAC1P63000 192 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 CSNK2A1P68400 391 aaPredicted RBP18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 SLC23A3Q6PIS1 610 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 ZIC4Q8N9L1 334 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 SSC4DQ8WTU2 575 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 LYZL4Q96KX0 146 aa18.34■□□□□ 0.53
CCDC88B-203ENST00000359902 IGLV3-1P01715 115 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 HCKP08631 526 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 CASRP41180 1078 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 CLVS2Q5SYC1 327 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 C1orf210Q8IVY1 113 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 KCNG3Q8TAE7 436 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 PGAM5Q96HS1 289 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 IFT46Q9NQC8 304 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 KCNN3Q9UGI6 736 aa18.33■□□□□ 0.53
CCDC88B-203ENST00000359902 COL6A3P12111 3177 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 OR5H15A6NDH6 313 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 TNFSF11O14788 317 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 DHHO43323 396 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 CDC14BO60729 498 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 MPIG6BO95866 241 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 HRH1P35367 487 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 CD96P40200 585 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 GMFBP60983 142 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 SORDQ00796 357 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 RSPO1Q2MKA7 263 aaPredicted RBP18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 SLC25A42Q86VD7 318 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 COMMD7Q86VX2 200 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 LRRC18Q8N456 261 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 STEAP2Q8NFT2 490 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 TMEM41AQ96HV5 264 aa18.33■□□□□ 0.52
CCDC88B-203ENST00000359902 F5H5K5 113 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 SOCS1O15524 211 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 HIST1H3AP68431 136 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 ZXDAP98168 799 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 ZMYND11Q15326 602 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 PLAC9Q5JTB6 97 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 TOR2AQ5JU69 321 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 HIST2H3PS2Q5TEC6 136 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 HIST2H3AQ71DI3 136 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 MARVELD3Q96A59 401 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 PIGQQ9BRB3 760 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 RBM24Q9BX46 236 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 BANF2Q9H503 90 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 FOXD3Q9UJU5 478 aaPredicted RBP18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 PLEKHA6Q9Y2H5 1048 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 LOC100509620A0A075B734 347 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 PPP3CBP16298 524 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 SUCLG1P53597 346 aaKnown RBP18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 SRXN1Q9BYN0 137 aa18.32■□□□□ 0.52
CCDC88B-203ENST00000359902 A0A1W2PP11 408 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 HLA-AP01891 365 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 RRASP10301 218 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 LIPCP11150 499 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 POU3F2P20265 443 aaPredicted RBP18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms