RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 BHLHE23Q8NDY6 225 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 MYDGFQ969H8 173 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 MRPL48Q96GC5 212 aaKnown RBP18.92■□□□□ 0.62
SHMT1-203ENST00000354098 VRK1Q99986 396 aaPredicted RBP18.92■□□□□ 0.62
SHMT1-203ENST00000354098 DYNLRB1Q9NP97 96 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 CAB39Q9Y376 341 aaPredicted RBP18.92■□□□□ 0.62
SHMT1-203ENST00000354098 ANKRD17O75179 2603 aaKnown RBP18.92■□□□□ 0.62
SHMT1-203ENST00000354098 BMP4P12644 408 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 NANOS3P60323 173 aaKnown RBP18.92■□□□□ 0.62
SHMT1-203ENST00000354098 FAM3AP98173 230 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 ODF4Q2M2E3 257 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 WDR38Q5JTN6 314 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 BCL2L15Q5TBC7 163 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 ELMOD2Q8IZ81 293 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 KLHL36Q8N4N3 616 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 OR51E1Q8TCB6 317 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 NINJ1Q92982 152 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 MYCBPQ99417 103 aaPredicted RBP18.92■□□□□ 0.62
SHMT1-203ENST00000354098 TPK1Q9H3S4 243 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 MSL2Q9HCI7 577 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 CHCHD3Q9NX63 227 aaKnown RBP18.92■□□□□ 0.62
SHMT1-203ENST00000354098 LRRC42Q9Y546 428 aa18.92■□□□□ 0.62
SHMT1-203ENST00000354098 NOTCH2Q04721 2471 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 NAV2Q8IVL1 2488 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 KIR3DL2P43630 455 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 DEFB113Q30KQ7 82 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 Q6ZR03 302 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 OR2G2Q8NGZ5 317 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 GATAD2BQ8WXI9 593 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 RGCCQ9H4X1 137 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 MOB1AQ9H8S9 216 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 FRRS1LQ9P0K9 344 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 ARFGEF3Q5TH69 2177 aa18.91■□□□□ 0.62
SHMT1-203ENST00000354098 A0A0U1RQV5 110 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 hCG_38984A0A1B0GV85 526 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 GGT3PA6NGU5 568 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 ZSCAN5BA6NJL1 495 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 CD300LBA8K4G0 201 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 IQCF6A8MYZ5 107 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 H7C417 338 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 PPOXP50336 477 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 GTF2A1P52655 376 aaPredicted RBP18.9■□□□□ 0.62
SHMT1-203ENST00000354098 TNK1Q13470 666 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 MOGQ16653 247 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 TMPRSS11AQ6ZMR5 421 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 GPR84Q9NQS5 396 aa18.9■□□□□ 0.62
SHMT1-203ENST00000354098 ZNF701Q9NV72 531 aaPredicted RBP18.9■□□□□ 0.62
SHMT1-203ENST00000354098 IGLV3-1P01715 115 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 MT-ND5P03915 603 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 HTR1AP08908 422 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 GSK3AP49840 483 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 DOC2BQ14184 412 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 XAF1Q6GPH4 301 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 FDX2Q6P4F2 183 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 COMMD2Q86X83 199 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 KLBQ86Z14 1044 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 EGFL6Q8IUX8 553 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 ZNF485Q8NCK3 441 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 OR56B2PQ8NGI1 322 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 MBD6Q96DN6 1003 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 PERPQ96FX8 193 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 SORCS2Q96PQ0 1159 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 CDCA4Q9BXL8 241 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 MS4A5Q9H3V2 200 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 OPA3Q9H6K4 179 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 GPR160Q9UJ42 338 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 USF3Q68DE3 2245 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 PLSCR5A0PG75 271 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 P2RY10O00398 339 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 LALBAP00709 142 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 SELEP16581 610 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 PTH2RP49190 550 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 ZNF81P51508 661 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 RDH10Q8IZV5 341 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 NANOGP1Q8N7R0 232 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 OR8G5Q8NG78 346 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 OR52N1Q8NH53 320 aa18.89■□□□□ 0.61
SHMT1-203ENST00000354098 BEX4Q9NWD9 120 aaPredicted RBP18.89■□□□□ 0.61
SHMT1-203ENST00000354098 A0A1B0GTI1 187 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 C17orf100A8MU93 164 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 H3BSH0 61 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 SPRY3O43610 288 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 RGS10O43665 173 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 MT-ND2P03891 347 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 CFL1P23528 166 aaKnown RBP18.88■□□□□ 0.61
SHMT1-203ENST00000354098 ACKR3P25106 362 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 GBX2P52951 348 aaPredicted RBP18.88■□□□□ 0.61
SHMT1-203ENST00000354098 FAM71F1Q96KD3 344 aaPredicted RBP18.88■□□□□ 0.61
SHMT1-203ENST00000354098 CCDC90BQ9GZT6 254 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 BABAM2Q9NXR7 383 aa18.88■□□□□ 0.61
SHMT1-203ENST00000354098 LY6HO94772 140 aa18.87■□□□□ 0.61
SHMT1-203ENST00000354098 PAX1P15863 534 aa18.87■□□□□ 0.61
SHMT1-203ENST00000354098 EEF1B2P24534 225 aaKnown RBP18.87■□□□□ 0.61
SHMT1-203ENST00000354098 MAGEB1P43366 347 aa18.87■□□□□ 0.61
SHMT1-203ENST00000354098 ALKBH1Q13686 389 aaKnown RBP18.87■□□□□ 0.61
SHMT1-203ENST00000354098 IRF3Q14653 427 aa18.87■□□□□ 0.61
SHMT1-203ENST00000354098 OR8B8Q15620 311 aa18.87■□□□□ 0.61
SHMT1-203ENST00000354098 RNLSQ5VYX0 342 aa18.87■□□□□ 0.61
SHMT1-203ENST00000354098 SLC30A2Q9BRI3 323 aa18.87■□□□□ 0.61
SHMT1-203ENST00000354098 GSX2Q9BZM3 304 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms