RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CD34P28906 385 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 GRB2P62993 217 aaKnown RBP19.22■□□□□ 0.67
SHMT1-202ENST00000352886 ALKAL2Q6UX46 152 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 ANGPTL4Q9BY76 406 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 LPAR5Q9H1C0 372 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 PROK2Q9HC23 129 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 PLEKHA6Q9Y2H5 1048 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 NOP16Q9Y3C1 178 aaKnown RBP19.22■□□□□ 0.67
SHMT1-202ENST00000352886 COL6A3P12111 3177 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 RFPL4AA6NLU0 287 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 RFPL4AL1F8VTS6 287 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 PDGFBP01127 241 aaPredicted RBP19.22■□□□□ 0.67
SHMT1-202ENST00000352886 ZNF250P15622 560 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 CSNK1A1P48729 337 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 GSK3AP49840 483 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 PHYHD1Q5SRE7 291 aa19.22■□□□□ 0.67
SHMT1-202ENST00000352886 TRAV14DV4A0A0A6YYC5 116 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 E9PLN8 166 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 NTN3O00634 580 aaPredicted RBP19.21■□□□□ 0.67
SHMT1-202ENST00000352886 SSX5O60225 188 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 MPIG6BO95866 241 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 LIFP15018 202 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 CCL1P22362 96 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 CD96P40200 585 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 SSR4P51571 173 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 GSG1LQ6UXU4 331 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 DOK3Q7L591 496 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 DTWD2Q8NBA8 298 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 C1orf147Q96MC9 270 aaPredicted RBP19.21■□□□□ 0.67
SHMT1-202ENST00000352886 ZNF385AQ96PM9 386 aaKnown RBP19.21■□□□□ 0.67
SHMT1-202ENST00000352886 NUDT16L1Q9BRJ7 211 aaKnown RBP19.21■□□□□ 0.67
SHMT1-202ENST00000352886 MFFQ9GZY8 342 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 RTTNQ86VV8 2226 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 A0A0A6YYD4 124 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 STK17BO94768 372 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 WDPCPO95876 746 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 NR2C1P13056 603 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 MPZP25189 248 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 CASRP41180 1078 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 GUCA1AP43080 201 aaPredicted RBP19.21■□□□□ 0.67
SHMT1-202ENST00000352886 OR2W3Q7Z3T1 314 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 BEST3Q8N1M1 668 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 TMEM156Q8N614 296 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 OR5M8Q8NGP6 311 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 M1APQ8TC57 530 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 TMEM41AQ96HV5 264 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 UCN2Q96RP3 112 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 BANF2Q9H503 90 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 RDH8Q9NYR8 311 aa19.21■□□□□ 0.67
SHMT1-202ENST00000352886 C5orf63A6NC05 138 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 B8ZZF3 427 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 MASP2O00187 686 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 RPA2P15927 270 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 MSR1P21757 451 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 DSCR4P56555 118 aaPredicted RBP19.2■□□□□ 0.66
SHMT1-202ENST00000352886 LSM6P62312 80 aaKnown RBP19.2■□□□□ 0.66
SHMT1-202ENST00000352886 ZMYND11Q15326 602 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 DMRTC1Q5HYR2 192 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 GLRX5Q86SX6 157 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 NAA40Q86UY6 237 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 SLC25A42Q86VD7 318 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 PAQR8Q8TEZ7 354 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 CST11Q9H112 138 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 DKKL1Q9UK85 242 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 CNTRLQ7Z7A1 2325 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 KIAA1549Q9HCM3 1950 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 A0A1W2PP11 408 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 ZIC3O60481 467 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 CDC14BO60729 498 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 B3GALNT1O75752 331 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 CHRM2P08172 466 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 Q7L0L9 218 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 GPER1Q99527 375 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 NELFAQ9H3P2 528 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 ZNF160Q9HCG1 818 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 PRDM6Q9NQX0 595 aa19.2■□□□□ 0.66
SHMT1-202ENST00000352886 NPIPA2E9PIF3 369 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 NPIPA3F8WFD2 350 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 SOCS1O15524 211 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 TDGF1P13385 188 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 ZFP36L1Q07352 338 aaKnown RBP19.19■□□□□ 0.66
SHMT1-202ENST00000352886 PPP1R1AQ13522 171 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 TRA2AQ13595 282 aaKnown RBP eCLIP19.19■□□□□ 0.66
SHMT1-202ENST00000352886 PLAC9Q5JTB6 97 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 ZDHHC22Q8N966 263 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 OR2Y1Q8NGV0 311 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 OR14K1Q8NGZ2 314 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 COQ8AQ8NI60 647 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 KCNG3Q8TAE7 436 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 LRRC20Q8TCA0 184 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 PGAM5Q96HS1 289 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 TMEM59Q9BXS4 323 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 NSG1A0A0A6YYJ2 146 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 OR2AT4A6NND4 320 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 CCSO14618 274 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 EIF1BO60739 113 aaKnown RBP19.19■□□□□ 0.66
SHMT1-202ENST00000352886 PMP2P02689 132 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 ZBTB25P24278 435 aa19.19■□□□□ 0.66
SHMT1-202ENST00000352886 GK2Q14410 553 aaPredicted RBP19.19■□□□□ 0.66
SHMT1-202ENST00000352886 LIN54Q6MZP7 749 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms